RNA id: TU162220


Basic Information

Item Value
RNA id TU162220
length 2134
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G137371
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22681865 ~ 22684031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaggTCCAGGGTTGGGAACCGGTGTATGACAGAACCAGACTGAAGGACTGTTTCTTTGGTTATATTCTGTTCTTGAGCTGCAGTAACAGTTGCTGTGTTACACTCCAGTCACTAGATGTCAGTACAGAACTGAGGTTGACACAAATCTGAGGCGGGGTGAGATGGGATGAATTTAAAACTTGGTTGGTCCCAGACTCAAAAAGGCCATTGGTGTGAAATGCAAACATGGCAATGGTGTGAAATGCAAACATGCAAAGCCTAAATGACCTTTTCGCAACTTCTTCGTAACGCAGCTGAAGCTTTGCCTGAAGATTCCGCTGTGGAGAGagcagtcagaaaaaaaaacgtgattAAGCTTGCATTAGAGGTTCTCAATTCATATTATTTAGAGGCATGGTGCAAGCTTTGCCTACCCAATTCCCCCATCACTGACTTCAAATCACTGAGAGGTCTGTTACTCCTCTGCAATTCATACAGTCGCTGTAGTGTTGTAGGAATTTTGAGCAAATCTGAGTACTAACAACTATGAAGCCAAGAcagtaatgtatttattacataGCCATTCACTTTCCACCCAGGAATAAATCAGATATTCTGCAAGGGTGACCCGCAGCCTGCATTTCATGAGACGCTCCCCACAACTGAACACTGGTGACACAATGATCTGTTACAGCAGATTAGAAACAAATGCGCTGCATGTGCTGTCTTTCAAGGAAGTGGTTCTCGAAGTGGGGTTCAGGGACCTTCAGGGAACTgtaatttttatctatttatgtatttattttttgttataggAAATTGTGGCCCactattatcaaagttattacatttattgttgatttttttcttattaccCTGTTTGACTGCTTACTAACGCAAACATAAGCACAAACCTAAGGTGTTCTGCTGATGGCAAGtccaggaattaaaaaaaaaatctgtggctCTGATAAATAGTCAGAATATTACTGTGTACATCTGAATAATAATGAGCACACAGTgcacatttgaataattttaaaatacttggatcatgtttataaaataaatctgtgctgaggggtgggtgaaatttattttaaagtggtGTCTggatgcaaataataataatagtaataataataatataaataaaaaaatcagaatcatTGCTTTGTGGCAGTTAAAACAATCATTTAGCTGCATGCTGCCATTCCATGTAGTTTTTTGGTCAGATGAAAGGTCTCGGGCTGCAAACGGATGTTAGGGCATCGTTAGACATTCCACTGGGCCAAAGGTGGATGCCAATGCTTGCCCAGTGTAGTTTTGCTAGTTGGGACCAAGTTGGACTTTTTAACCACCTTCAAAACCACAATGGATATGAAAAATGCTCATTTCCCCATGCTGAATCAGTGTTCGGACATCTTTGGCAGGGTTGTTATTAAAAGAGCTCCTTTGCCAATGCTGTATGGGGACAACATAGCTACCAAACATCAGGTTGCTACCTGGGGTGTATGCTAAATGTGGGCCAGAACTGGGCCAGAACTCAGCTTTTATCTGGATGTCCCACATTGTCCTGCAAACTCTGAACAACACTGATCTGGTCACCCTATGTTCTTCATATATAACCTTGTCCTATACATATTTAGGCAGTGACACCCACTGAGTGTGCTCTTGTCCCACCTTTTGCATCCATTTCTAAAGACCTGGACACACACAGGTACTATTAGTAGTATATTAGCAATAATAACACAATGAAACCTATGTGTAGCACTAGCACGGTGCTAATGAACTTAGTGGGTTATGGTATATCTAGCAGAAATTGTGCTCTGTTTTAGAAATTATAGACGTTTCTGAATATCAGTGTATGTCAGTACAAAATGAGATTAACCTGGTTAAACCACTTACCCCCGCCAAAAAGTTCCTTAATCTCTGAATAAACGATGTAGCCGTCGCCATAGCTGAAGTCAAGGTGAAAAAGATATGTTCTGCACTGGTGCTGTTCCAGGATCAGCTCTGCTTCTAGGAATCGAGCCTAGCCGCAACACGTATTTCGTTGCAGCTGATCTGACATCAGTCACGAAcacttatattttttttcctctcgctAAGCTGGGAGCGGAAGTAGAATTTCTTCTTCGTGCCTCAACGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162078 lncRNA upstream 44876 22635664 ~ 22636989 (+) False LOC113533432
TU162079 lncRNA upstream 44978 22635664 ~ 22636887 (+) False LOC113533432
TU162073 lncRNA upstream 88597 22592233 ~ 22593268 (+) True G137232
TU162068 lncRNA upstream 170689 22510905 ~ 22511176 (+) True G137229
TU162067 lncRNA upstream 172371 22509211 ~ 22509494 (+) False LOC113533405
TU162259 lncRNA downstream 41131 22725162 ~ 22730142 (+) True G137401
TU162351 lncRNA downstream 233233 22917264 ~ 22919033 (+) True G137486
TU162496 lncRNA downstream 267934 22951965 ~ 22953295 (+) True G137613
TU162497 lncRNA downstream 268076 22952107 ~ 22953295 (+) False G137613
TU162511 lncRNA downstream 279100 22963131 ~ 22963354 (+) True G137626
XM_034306780.1 mRNA upstream 44891 22594534 ~ 22636974 (+) False LOC113533432
XM_026925582.2 mRNA upstream 44891 22594535 ~ 22636974 (+) True LOC113533432
XM_026925584.2 mRNA upstream 44891 22594535 ~ 22636974 (+) False LOC113533432
XM_026925541.2 mRNA upstream 98024 22512072 ~ 22583841 (+) False acot7
XM_026925542.2 mRNA upstream 98024 22513000 ~ 22583841 (+) True acot7
XM_026925504.2 mRNA downstream 1471 22685502 ~ 22706507 (+) False kank3
XM_026925503.2 mRNA downstream 1472 22685503 ~ 22706507 (+) True kank3
XM_026925118.2 mRNA downstream 178295 22862326 ~ 22867020 (+) True pex10
XM_026925506.2 mRNA downstream 214973 22899004 ~ 22915980 (+) True clcn6
XM_026925507.2 mRNA downstream 214973 22899004 ~ 22915980 (+) False clcn6
trnaa-ugc_5 other upstream 991373 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 991769 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 992127 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 993274 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 993670 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 564317 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 830555 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1066386 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1327586 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1327586 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile