RNA id: TU162259


Basic Information

Item Value
RNA id TU162259
length 2211
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G137401
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22725162 ~ 22730142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggaggtgcactatttatttatttatttattttaaaggccAGGGAATCTGGTTGAGAGTAGAGGTGGAGGTTTTCACTTTCATGAGAGTGAGAGCAAGCCATCAGATATGAAGCATCAAAGAAATACCACGTTCAGTAACATGCATTTACAGGGTTCATTCATTTAGCCAAAGTAACTGCCTAGTCAGGGTCATTGTGCTTTAAATCAGGCTAatagtttgtttacattttgggaaacagaaacACTTATTTGGGAAAAATAACTCGGTGAGTGGAATTAAAATACatgccacacccactttgggtttaaatccgaatacagatacaaatatagatGTTTGGAGCCCTAAACAGATGCAGATAGTGTCATTGCTTCACACCCCTACTCTTCCTATTGTTTTCAAATGTGCGTGCTGAACAAGCACAAACGGACCTGATTTTTCAGGTGTCTGATGTTCTTGTGTCAAAGAAATACATTTGGCACAAAACTCACACTCAGTTCACGTTTATGTCCCGTGGTTCAGAGAACATTTGTGCTTATGAATCTCTATGTGCTTATGAAATGCTTTCCTAGAATAAAAATGCCATTGTCAGATGAGTGTCTAGTTGTCCACTTTGCTGTATCTGTGAATGAAATTGCGAGTACACTTCTATTGCCTTCTATTGCTGACTAATGTGAAAATAACACACTAAGTTgctagtattaaaggaatactaaATGATTTGAGTAGGTATCAAATTCTGATTAACACTTAAAAGTCTCAGCTTagtattcagttatttatcttaAAGCATACAAGAAACCAGAGTGAGAATAACAAGAAAGATATGCAATTATAAGAGTGTTAAGTGAGTTTCTTCTTAGAGATGTCACTTATTTACATTATAccattttttgtaaaataaatgagaaattataacaatatttaatCATGCATTTATTACTCAGAATTTTCTTATAGTATAAAAGTAATAAGTCATGAAACATTCTTATATTCAATACAGGCCTTCACTTTTCTCATTCCTAATACATTTgaaacaaaatgttatttttttttagatgacaTCTactatgaaaacaaacaaacaatcaaacaaacactTTAGCTCCTGTAACTAGAATGTTCAAACTTTAGTTAGTGTATGTATTCTACATCTACTGTTAGGTCAGTATGAGTTCATGAATGAAAGACTTGTAGCTTTTATAATCTAAAACcagtaaataaacataaaagtgcTTTTCATGGTCCAAATTAAACTCTGTGtagtaaattaaaatgttgTCATGATGATAAATGCAAATAGCAATGGTTTTCCATGAGCAGTTTAAAGCTAACACTTCCTAAATTGCAAGCATGGATCTTTTGTTTGAAGCAGAAAAATAAGCTGATTGTATGAACAGAAATGCTTTTCTAATCATGTTGAGTGGATTTAAGCTTTGCATTTCTCAGAGGTTTCTGCCTGAGTCTCCTCCCTTTTTCCAAACCGCTGACCAAGTTCAGTAGTCAAGACGGAACAACAggattCTGCTGTATGTTAGCGATGTTTCGTGATTTGGCAGTCAGCTCCATGAGGGCCAGAACGAGTCCCAGCCCTAAGCCAAGCGCCAAAAGCAGGAAGACACCCTTCAGGCTGCTGGGCTTCAGAGATGAGGCCTGTGCGTCTTCTGCCATGCAGCTGCTTGCCCACCATTTATTACGCAGAAAATCCAGTTCTCCGGACTCGCTCAGCTGTAGGATGGCCACACTCAGGTTTTTCAGCATGGGAAAgCCAAAGGAACTGCAATGCTGTAGCCTCTCATGCCAATGATCTCAGGACAGCGCTTTAGGTTGCAGTAACGTGTCACAGCCAGGTCCAGAGACACAGATTCTCCAATGAAGGCATATTTCCCCTCCTGAGCCATACGGATGCCTTCTTCCATTGTCTGGGCATAGGACTGCTTTCTCTCCATGTTTTCGAAGATGCGCCGGTAGGTAGGATTGTTGGAGTTTTAAAGAAAGCAAGAGAGGAGGAGCCCTTAAGTGTCCCATACTCAATGACATTTTGGTTCGCCAGGTCTTCAAAGCTCTTAATTGAGAGCTGCTTGTTGTCCATGTGCAACCAAGAACTGAGGTTGGCGAAGTAGCAGGCCAAGACGACTAATGAAAACAACCACCAGATGGCAGTAATAACCCGTCCTGAGAAGGACTTGGGGTGTGGACCagcacctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162220 lncRNA upstream 41131 22681865 ~ 22684031 (+) True G137371
TU162078 lncRNA upstream 88173 22635664 ~ 22636989 (+) False LOC113533432
TU162079 lncRNA upstream 88275 22635664 ~ 22636887 (+) False LOC113533432
TU162073 lncRNA upstream 131894 22592233 ~ 22593268 (+) True G137232
TU162068 lncRNA upstream 213986 22510905 ~ 22511176 (+) True G137229
TU162351 lncRNA downstream 187122 22917264 ~ 22919033 (+) True G137486
TU162496 lncRNA downstream 221823 22951965 ~ 22953295 (+) True G137613
TU162497 lncRNA downstream 221965 22952107 ~ 22953295 (+) False G137613
TU162511 lncRNA downstream 232989 22963131 ~ 22963354 (+) True G137626
XR_003403437.2 lncRNA downstream 272561 23002703 ~ 23006396 (+) True LOC113533633
XM_026925504.2 mRNA upstream 18655 22685502 ~ 22706507 (+) False kank3
XM_026925503.2 mRNA upstream 18655 22685503 ~ 22706507 (+) True kank3
XM_034306780.1 mRNA upstream 88188 22594534 ~ 22636974 (+) False LOC113533432
XM_026925582.2 mRNA upstream 88188 22594535 ~ 22636974 (+) True LOC113533432
XM_026925584.2 mRNA upstream 88188 22594535 ~ 22636974 (+) False LOC113533432
XM_026925118.2 mRNA downstream 132184 22862326 ~ 22867020 (+) True pex10
XM_026925506.2 mRNA downstream 168862 22899004 ~ 22915980 (+) True clcn6
XM_026925507.2 mRNA downstream 168862 22899004 ~ 22915980 (+) False clcn6
XM_034306280.1 mRNA downstream 233360 22963502 ~ 22975156 (+) False plod1a
XM_026925883.2 mRNA downstream 233367 22963509 ~ 22977089 (+) True plod1a
trnaa-ugc_5 other upstream 1034670 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1035066 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1035424 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 1036571 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 1036967 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 518206 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 784444 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1020275 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1281475 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1281475 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile