RNA id: TU162543


Basic Information

Item Value
RNA id TU162543
length 2627
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G137650
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23095798 ~ 23159507 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGGAAATTAGGAGCAGACCCCCATggctttctctgtgtctctcaatGAACTTTTATGTTGCTGTTTTATCACAGTGTCATCTTTATTCAATTGATATGAGCAGTGTGATCAGATCTTTGTCACAACCTGCTTGTTGACTAATAAGAGTCCTGCTGTTAAAAGGTCAAGGGTGTGTGCGCTTGCTAGGGTGAGTTTAAGAGCGTGTGTGGGGTTGTGTGTCAGTCTGCATGTGACAGGGACAAATGTGAGATGCGTTTATAGTAGCAACAAAAGCCTACAAACTAAATCAGCAGCACTGGGTGTATAATCAAAAATCCATGTTAGCGcaccagaaaaaaatggaacCTAATACTCAATTCTTAGAACACCAGTGAGCTTAATACTTCCTGTCATCCCATAAAGCTATAGTGGCTTTTCAGAAGAGTGCGTGAGAGAATAGttttctgtcacacacacatccaaatgTCACAACTTTGGTTTGCAGGAATTTCATTTTGCTCTCTCATGCATCTTCATTTAAAGATGCAACAACTGACCACAGAGGCTTCTGcctgaaaaaaatatagaagAGGACATTAGAGAGGAACTCGCAGgaagacattgtgtgtgtgtaaatgggaCGTTCACTGTGTGTATTCATGGTTTGTACtagttgtgtagagtttttcTAGTGTTCCTCAGCTCTACAAGAGAacattgctaaaaaaaatgcatttctacTTTTGAAATCAGAGTATTGGAATATGGAGGACATGTGTCCATGTGTGCTTTGGTGTGCTTGAGATGACAAGCTCAAGCACACCAAGTGTTCACACGATGAAAttgcataaataaatctgtttttattggCTGTGAGCGTCATGCCTTGACTCAAGTGTTTcactagagagagaaaagcgCAAATACGACCTGTTTATTTTCAGGCCTGCAGGTGTCTGCTAATGGCttattggtttaaaatgacTAGCTCACATCCCGCCAAGCAACTGCCAACTAATGTTGGCGgagttgtgtaaatgtgtgtatatacttgatttcagttttttttccctgttcaaGACCTAAAGAGATGTTctcttttatattaaaaaaaatacaagaaatattCACATAATCAATCAAAAATGATAGTTTATCTTGACAATTCATAATAGCTACAAATGTGTTGAAAATCAAGAGAGCTTCCTGACTTGGTacaatttcaaatatttttgtttgatcATCTTTTCCAACCAAATAATCTGTTTTCAATCAGAAACAGCATTGGACAAAACATGGAGACTTAATGAAAGATCATGTagtgtgctttatttatttatttattttgtttttttgcaaatgCCATAAATCATAATTCCTAAATGTTATTTTAGCAAACACCTGTGCTCCACTAGAAAGTACAGCCCACATCACGAGCAGGCAGGATAGCAGAGTTTCAACTTGGGATGAGCTCATCGCTCTGCAGGCGCACCACAACTGTGCACTGTTACCTGTCATTCTGATAATTTCAGTACATGTACAACACGGCTAAGGGAAATCTTCATGTTGCCCCATGGCCTCGACTGTCAACTCTGACATACTCAAGCCTCACAGCAACGACCTAGTAACAACTATCTGCACGCAAGAAGGCCATTAATTGAAAGTGACCATGTCAACTTCCTTACTCAAGAATCAATCACGAGATTTGTGTcgaatttttttccccctcaaactTTTTCTCCGATGTGGCTGCAAAGCTTGATTCAATTATGGTGCGGAGGCCTGTCCTCAGATGTGGGGTCCGTTTCCAATCGAACCAAGAGGTCATGCTTCGTGTTTCACAATGTCATGACAGACTCTCTGAACAGTTCTTGGAGGAGGCAGGGGTCCACAAATGGTTTTGTTTCAGCGTTTTGGTTATATGAGTTTAGCCACCACCCCCTCCTTAAATTGGATTCCCAATCAGGTTAGTGTCCGATAGCGTCCAGGGTCTCCGGTAAGGCTTTGAAGTGCAGGAACTCTGTCTGCCCGCCTCCGGCTGGAGTGCCTTATCTGTTGCACTACGGGACTATTGTTTCAATCAGCCAGACATTGTTAATTACCCTTTTCATTGGGGTAAGAGGTAGGTAGAGACAAATCCAATTTGGCTGCACTTATGTTTGACCTCGGACACCGCCCCCGGGTACTCGTTTTGTGTCGGTCTTGTATTACGTGGCTTCTGGAAAGTTCatccattttaaaaaagaaaagttgtcTTATGGAACTCAGATTGTGTGGAAATAAAGTGTAAGCCAATGCACTGTGAATGCATACTGTGAGACATCATAATAAACATTCGGTTCTCTGTGCGACAGCATCCGATTGAGCTCGCACCATAGTCAGCCAAGAAAAATGGGGCTTTAAGCAACAAAGACGTAGTGGATGGGCTGCAATGTGTTTACAGTTGATCCAACGGAATTGGGAGGGGTTAAAAGGGGGTGCCCAAGGGACAGCGAGTCCTTCTGAAAGGGGCTATTCTTCCTTCTTTGAGCACATCAGCTTGTACAGCTGTTGAAGCAGTGAGGGTAATTATCGCCCGTTTACCACTGTTGACTTAGCGCTTCTTCTGGCCATctttggaacatttttttttcggGggtttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403437.2 lncRNA upstream 89402 23002703 ~ 23006396 (+) True LOC113533633
TU162511 lncRNA upstream 132444 22963131 ~ 22963354 (+) True G137626
TU162496 lncRNA upstream 142503 22951965 ~ 22953295 (+) True G137613
TU162497 lncRNA upstream 142503 22952107 ~ 22953295 (+) False G137613
TU162351 lncRNA upstream 176765 22917264 ~ 22919033 (+) True G137486
TU162557 lncRNA downstream 88882 23248389 ~ 23260697 (+) False tprg1l
TU162556 lncRNA downstream 89090 23248597 ~ 23257398 (+) False tprg1l
TU162558 lncRNA downstream 98164 23257671 ~ 23261991 (+) False tprg1l
TU163000 lncRNA downstream 587956 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 730923 23890430 ~ 23894716 (+) False praf2
XM_034306279.1 mRNA upstream 95193 22984527 ~ 23000605 (+) True mfn2
XM_026925883.2 mRNA upstream 118709 22963509 ~ 22977089 (+) True plod1a
XM_034306280.1 mRNA upstream 120642 22963502 ~ 22975156 (+) False plod1a
XM_026925506.2 mRNA upstream 179818 22899004 ~ 22915980 (+) True clcn6
XM_026925898.2 mRNA downstream 65496 23225003 ~ 23246352 (+) False prdm16
XM_026925839.2 mRNA downstream 88841 23248348 ~ 23259460 (+) False tprg1l
XM_026925838.2 mRNA downstream 88841 23248348 ~ 23257525 (+) True tprg1l
XM_034307043.1 mRNA downstream 108395 23267902 ~ 23304514 (+) True tp73
XM_026925549.2 mRNA downstream 147497 23307004 ~ 23322846 (+) True rer1
trnaa-ugc_5 other upstream 1405306 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1405702 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1406060 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 1407207 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 1407603 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 88841 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 355079 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 590910 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 852110 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 852110 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile