RNA id: TU162556


Basic Information

Item Value
RNA id TU162556
length 1583
lncRNA type sense_over
GC content 0.44
exon number 6
gene id tprg1l
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23248348 ~ 23261991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGCTTCTGCAGAGCGCCTGCTGTTTTCTCCTGCAGAAAAAGAACAGCACTGTAAATCGCCAAATTGAGCTAAATAAAGCTAATATTAGTGTTTGTTATAAACGTTTAGAATAATATGCTTCAGCTGAATGACACGGTGGAGCCGGAGAGTCCAGGGGCTGCGGTTCTTCCCGCCGCCGGGGTTGAGGACGCGCTCGACGGGCTGGAGGTGGCGTTCAGTCCGGGGCCTGAGGCCCAATCTGTCCTCGGCTTCGGAGCTGCTGTAGCCTGCTGCTCTCCGCTCCAAAAACTCACGCCTTTTCACGTCCACAACCCAACCATCCGTGCGAAAGTGAAGGATTACTTCGTGTTTAGGGAACCATAGAGCAGGCGGTGAACGATATCCGCACAGTGGCTTTGCCTTCAGAAGATGGCGAGGTCCTGAGTGTGTGGCTCTTAGCAGAAGTTGATCACTGGAACAATGAAAAGGAGAGACTGGTGCTCATAACCGAGAGGTCCCTTCTGGTTTGCAAATATGACTTCATAAACTTGCTGTGTCAGCAGGTCATCAGAATTTCCTTAAACGCTGTGGACACCATTTCAGTTGGAGAGTTTGAGTTTCCCCCAAAATCTCTGAATAAGAGAGAGGGCAGTGGTGTTCGTGTGCATTGGGATAAACGGCCGAGGCCTTCTTTCCTAAACCGGTGGAACCCCTGGTCCACTGACATGCCTTATGCCACCTTCACAGAGCACCCCATGGCCCATGCTGATGAAAAGGTGGCTTCCCTTTGCCAGgGTAGACTTTTCCTGTATCCCAGGGGTGAATATAAAAGTTACAGAAGTCCTGTCATATGGAAAGAATATTGCTGCTTGGGGCTTTGCAACGTGAAgatattttttgtctttagcATTGGTCTGTTCCAGTTTCATCATTCAAGCCATTCTGCCACACTTCATAGTAGTGAAATCAGTGCATGATTTGTTGAGAAATTACAAGTAACTTGCACTTTGAATTAAACTTTGGGGCGATCTTTTACAAAATGTTCCCGTGCTGTAACTAATGTGGCTCGGTTTGTGATGTTAATCCTGGCTCAGGTTAGGTTAGTAATTTAGTacctttcattttaaatgctgcTTTATTGTTCAAGGATGCAAATGAGGGTTAGGAGTTTAATTCTAACCAGAGGTGATTAGTGCACAGGTGTTAATACGGGTTCCCTAATAGGTTATTTGCTTGTAtgcacttttatttgtttttttttgtgtctctcACAGTACAAGGTTATGTGTTTTGTACTAAACCTCCTGATGATGGCACCATTTGaaggatttttcttttgtaaaaatgtaaagaattgCATGTGAACTGTGCATGCGGTTTACTGTGTGTAAAAAGTGGTTTTATGTGTGTGACATTTGCAATCTGGTCGTTGCTTCGAATCACCCATTACAGCTTTCACACTCCTTTTCTCTGGCAAAACATGTCTAATTAATACTAAGTAGCACTCAATTCAAAACTGTCATCACTCCTCAATTTCTTGATGTCTAACTGCTGGACCACTTTCTGAGACCCAAATTACTTAcgattattagttattattgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162543 lncRNA upstream 89090 23095798 ~ 23159507 (+) True G137650
TU162544 lncRNA upstream 144931 23100607 ~ 23103666 (+) True G137651
XR_003403437.2 lncRNA upstream 242201 23002703 ~ 23006396 (+) True LOC113533633
TU162511 lncRNA upstream 285243 22963131 ~ 22963354 (+) True G137626
TU162496 lncRNA upstream 295302 22951965 ~ 22953295 (+) True G137613
TU162558 lncRNA downstream 273 23257671 ~ 23261991 (+) False tprg1l
TU163000 lncRNA downstream 490065 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 633032 23890430 ~ 23894716 (+) False praf2
TU163191 lncRNA downstream 732500 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 864212 24121610 ~ 24124569 (+) True G138239
XM_026925896.2 mRNA upstream 2245 23016362 ~ 23246352 (+) False prdm16
XM_034307043.1 mRNA downstream 10504 23267902 ~ 23304514 (+) True tp73
XM_026925549.2 mRNA downstream 49606 23307004 ~ 23322846 (+) True rer1
XM_026925550.2 mRNA downstream 49606 23307004 ~ 23322846 (+) False rer1
XM_026925552.2 mRNA downstream 49606 23307004 ~ 23322846 (+) False rer1
XM_026925551.2 mRNA downstream 49610 23307008 ~ 23322846 (+) False rer1
trnaa-ugc_5 other upstream 1558105 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1558501 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1558859 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 1560006 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 1560402 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578528.1 other downstream 257188 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 493019 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 754219 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 754219 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 2014211 25271609 ~ 25271680 (+) True trnae-cuc_21

Expression Profile