RNA id: TU162557


Basic Information

Item Value
RNA id TU162557
length 2211
lncRNA type sense_over
GC content 0.48
exon number 8
gene id tprg1l
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23248348 ~ 23261991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTACAGTGCTTATTTACAGTGCAGTATTTACAGTGCAGTATTTACAGTGCAGTATTTACAGTGCTTCATTACAGTGCAGTATTTACAGTGCAGTATTTACAGTGCTTCATTACAGTGCAGTATTTACAGTGCAGTATTTACAGTGCTTTCTGTAGGTGAATGTGGCTTTAAGAGAGGAGCAGAATAATATGCTTCAGCTGAATGACACGGTGGAGCCGGAGAGTCCAGGGGCTGCGGTTCTTCCCGCCGCCGGGGTTGAGGACGCGCTCGACGGGCTGGAGGTGGCGTTCAGTCCGGGGCCTGAGGCCCAATCTGTCCTCGGCTTCGGAGCTGCTGTAGCCTGCTGCTCTCCGCTCCAAAAACTCACGCCTTTTCACGTCCACAACCCAACCATCCGTGCGAAAGTGAAGGATTACTTCGTGTTTAGGGAACCATAGAGCAGGCGGTGAACGATATCCGCACAGTGGCTTTGCCTTCAGAAGATGGCGAGGTCCTGAGTGTGTGGCTCTTAGCAGAAGTTGATCACTGGAACAATGAAAAGGAGAGACTGGTGCTCATAACCGAGAGGTCCCTTCTGGTTTGCAAATATGACTTCATAAACTTGCTGTGTCAGCAGGTCATCAGAATTTCCTTAAACGCTGTGGACACCATTTCAGTTGGAGAGTTTGAGTTTCCCCCAAAATCTCTGAATAAGAGAGAGGGCAGTGGTGTTCGTGTGCATTGGGATAAACGGCCGAGGCCTTCTTTCCTAAACCGGTGGAACCCCTGGTCCACTGACATGCCTTATGCCACCTTCACAGAGCACCCCATGGCCCATGCTGATGAAAAGGTGGCTTCCCTTTGCCAGGATCAGAGATTCTCCATCGCAGTGCCAGAACAGTGACTGCACCTGTAAACCTGAGTTACACAGAGCATGCCAGAGAATCACCAGGCCGGCGGGGGACCACAGATAGAGTTTGGCGTTTCCGGTGCAGAGTGCCAGGCGTGGCCGGCATGGGTCCCAGACGAAGCAGCGCACAGCTGAAGTGTGTTCCAGTACGGCCAGCAGGCTGAGCCTCTGCATGtcccacagccacacacactgcGCCATGCTGTCTGAGACACGCGGTTGGCACAGCGTCAGCCAGCACAGTGACATTACTACTCATCAGAGTACTTAATGATGATTAACACCCCACCGCCAAGCCAAACAGGAAGACACGCTTGTTAGGGAGTTTGCACTCGCAAGAATAAAGCTTAGTGGATAGAATAAAGGGGAATTACACAGCAGCTAAAAGCAGCAAATGTCTCTAAATACCAGACTCAGCGGGCAGCCGGTAATGCTTCTCATGACTGGTAGTGATGCCAAATGGGGCAGGGGCACTCATCAGGAAGTGGCTATGACATACTGCATGTGAAAGAAGCTTCTAGATTTACCcttcttttattattcttttagtATTATCTTCTAGCAAtctattttataacaattacaTAATATCGATAATTAGATTATTACCATTTTTTGTGGCAAGGTAGCGATTGTCTGCACTGAAAGAAACAGCAGAGATTCCGATTTTGGGGTTGGCACGATCTGGATCAGGCTTTGCCACTGACACCTGGACTGGCAATGGAGCAATCTCATctgaaataaagtaataatcAGTCAAGTTGAATAGAAACATCTCCACTATAGAAGTCCAATTTCATACTAGCATATTTCTAGCAAAAGTTTTAGACCAGTACCCTTCATCTACAGTATATATCAGCTTCAGAGGAGTGTGGGATGTCAGATTGCTGTGAACACATCCCCAGAAGTGTAGTGCAACATCTGTTGCCAGGAACAAATCGTTGAATTTGAGCCACGCAAAATACTGAGGCAAAGTGTGACTGTCAGCATGGATGGTTTCATGTTTTTAGGAGCAGAGACACAGGCTTAAGGAAGAGATCTTGTGTCAAAACATGACACTAGGCGCTATGTTTTTGGTGGTAAGATTTATATGGGGGCATTCTCGCAGAGCTCAGTCAATGGTCTGCCCACAGAAATAGTTGGTCAACTTTGCTGCGTGCTGGAATTCATAATGGCCCTGTCACCATGCCGAGTCTTCCAGCCTCAGGCTCCACTCAAACACAACTGTCTGCATAACACGCAATATTAGCATACACActcgcccacacacacaccaatagtGCTCATCAGCAAGATAACTGAAACAAGACCTAACATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162543 lncRNA upstream 88882 23095798 ~ 23159507 (+) True G137650
TU162544 lncRNA upstream 144723 23100607 ~ 23103666 (+) True G137651
XR_003403437.2 lncRNA upstream 241993 23002703 ~ 23006396 (+) True LOC113533633
TU162511 lncRNA upstream 285035 22963131 ~ 22963354 (+) True G137626
TU162496 lncRNA upstream 295094 22951965 ~ 22953295 (+) True G137613
TU163000 lncRNA downstream 486766 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 629733 23890430 ~ 23894716 (+) False praf2
TU163191 lncRNA downstream 729201 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 860913 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 1102252 24362949 ~ 24363761 (+) True G138280
XM_034306499.1 mRNA upstream 2037 23016357 ~ 23246352 (+) False prdm16
XM_034306498.1 mRNA upstream 2037 23016359 ~ 23246352 (+) True prdm16
XM_034306501.1 mRNA upstream 2037 23016360 ~ 23246352 (+) False prdm16
XM_026925896.2 mRNA upstream 2037 23016362 ~ 23246352 (+) False prdm16
XM_034306500.1 mRNA upstream 2037 23016363 ~ 23246352 (+) False prdm16
XM_034307043.1 mRNA downstream 7205 23267902 ~ 23304514 (+) True tp73
XM_026925549.2 mRNA downstream 46307 23307004 ~ 23322846 (+) True rer1
XM_026925550.2 mRNA downstream 46307 23307004 ~ 23322846 (+) False rer1
XM_026925552.2 mRNA downstream 46307 23307004 ~ 23322846 (+) False rer1
XM_026925551.2 mRNA downstream 46311 23307008 ~ 23322846 (+) False rer1
trnaa-ugc_5 other upstream 1557897 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1558293 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1558651 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 1559798 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 1560194 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578528.1 other downstream 253889 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 489720 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 750920 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 750920 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 2010912 25271609 ~ 25271680 (+) True trnae-cuc_21

Expression Profile