RNA id: XM_026925047.2


Basic Information

Item Value
RNA id XM_026925047.2
length 1490
RNA type mRNA
GC content 0.40
exon number 3
gene id praf2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23890416 ~ 23894725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATGTAGTTTCGCAACCGTATCGAAAATGGTGGACGTTCAGCCTCCGCCTTTCCGGAGCCTTGatgattttcttttcagttcGGCCCGATTCTCCGTGCCAGATGTCCGTAATTTAGAGAGATGGAACAACCGGATCATTAACAACTTGCTGTATTATCAGACGAACTATTTTGCCTCTGCTTTGGCTTTCCTGCTGATAGTGGGGTATTTCCGACCCTTTCAGCTCTTCCTTGGAGCGGCTGTGGTGATCTCTGTGTTTCTGGGCTTCGTCTGGGCTGCAGAGAACAAGGCCACAGTGAGACGTTTCCGGAGGAACCATCCTTCCCTCTGTCTGATTGCCATCTTTGGCTCCAGCTACTTTCTGCTGTCCATCCTGGGAGAGGTGGCTGTCTTTCTCTTCGGCATCACCTTCCCCATTTTAATGATTCTGGTCCATGCGTCAGTAAGGCTACGGAGCTTAAAGAATAAAGTGGAGAACAAGCTGGAGAGCATTGGGCTGAAGAGAACGCCTATGGGTCTGCTGCTGGAGGCACTCGGCCAAGAGCAAGAGGCCGGCTCGTAGTGTTTGGTCCTGACCCGAAGCAACCTTCAGCAACATTCCCTTAAGTTCTAAACACTATAAGCAGTGTTTTTACTATTGTGCCATTGTTTCTATAGACAAACACAAAGGCCTTAGGGGAAGAAAAATAGGAATatgtacagttgagtgcaaaagtttgcatcccctgtGAAGTttaatggggggaaaaaaacaggcaaaatcAACAGGAAAAATAGTTTAACCGTGAATAGTTTTCCACTATTCATGTCTTAAAATGCATTGACTATTTTTCTTACTTGTGATCATGAAGGAGCATCTATGAAATGGAAACACTACGCATCATCttgttataaattaaatttgtgcatttctcattttaaaCTAAGGGTACGCAAACTTCTTCCACTCAACTTTGTTTTAAGTGAAGTATAATTGAATGAACGTCTACCTGCCTTTAACATCCTAGGTTTATGATTTTATGGTTTATGAGTTCTTgttgcacatacacacattagtgCATTACCTTTCTACATTTGTGCCAACATTCCCCAAGTAACAAGGGCCTTGTTGATTTCCTCACACATTGTTGTTAGTGACCAATGCATTACACATTCTTATATTTAGAACATATGTTTTGCTGATGACTCATAGACATGTCAATTATTTATAtgctatttgtttaattaagatATATCAAAGTGTATATCAAACAAAATTGGTTTAGGGAGATTCCCACAAATGACTGATTCATTATTGGGGTTAAACACTACAAGTGTTTCTATTTGATCCTTTGAGTTGTTTAGGAGTTCACACATTTTCAGAAGTATTATGAGGATGGATTTGAACCGGCTGTTTGAATTTGATCTCAGTTTGCCAATGTGTTACTGAATGCcaaatttttctttgtttgttttgtcaatAAAACTGACATGATTTTCTAACATCAA

Function

GO: NA

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163000 lncRNA upstream 140048 23747463 ~ 23750368 (+) True G138014
TU162558 lncRNA upstream 628425 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 629719 23248389 ~ 23260697 (+) False tprg1l
TU162556 lncRNA upstream 633018 23248597 ~ 23257398 (+) False tprg1l
TU162544 lncRNA upstream 786750 23100607 ~ 23103666 (+) True G137651
TU163191 lncRNA downstream 95173 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 226885 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 468224 24362949 ~ 24363761 (+) True G138280
TU163604 lncRNA downstream 607361 24502086 ~ 24502371 (+) True G138535
TU163649 lncRNA downstream 752054 24646779 ~ 24647451 (+) True G138578
XM_026925566.2 mRNA upstream 1361 23883151 ~ 23889055 (+) False timm17b
XM_026925565.2 mRNA upstream 1361 23884339 ~ 23889055 (+) True timm17b
XM_026925053.2 mRNA upstream 13030 23866857 ~ 23877386 (+) True gpkow
XM_026925663.2 mRNA upstream 169559 23711642 ~ 23720857 (+) True renbp
XM_034306861.1 mRNA upstream 179101 23706068 ~ 23711315 (+) True si:ch211-218o21.4
XM_026925379.2 mRNA downstream 1340 23896065 ~ 23919350 (+) True cacna1fa
XM_026925380.2 mRNA downstream 1340 23896065 ~ 23919350 (+) False cacna1fa
XM_026925132.2 mRNA downstream 25552 23920277 ~ 23931516 (+) True sypb
XM_026925878.2 mRNA downstream 40399 23935124 ~ 23951250 (+) True plp2
XM_034306735.1 mRNA downstream 61783 23956508 ~ 23989190 (+) True prickle3
TU162995 other upstream 133302 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 366440 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 630963 23248348 ~ 23259453 (+) False tprg1l
trnaa-ugc_5 other upstream 2199924 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 2200320 21690025 ~ 21690096 (+) True trnaa-ugc_4
TU163200 other downstream 116892 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 116892 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 1376884 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 2014850 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 2021365 25916090 ~ 25916798 (+) False LOC117597866

Expression Profile