Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU163191 |
| length | 200 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G138176 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 23989898 ~ 23990097 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU163176 | lncRNA | upstream | 95182 | 23890430 ~ 23894716 (+) | False | praf2 |
| TU163000 | lncRNA | upstream | 239530 | 23747463 ~ 23750368 (+) | True | G138014 |
| TU162558 | lncRNA | upstream | 727907 | 23257671 ~ 23261991 (+) | False | tprg1l |
| TU162557 | lncRNA | upstream | 729201 | 23248389 ~ 23260697 (+) | False | tprg1l |
| TU162556 | lncRNA | upstream | 732500 | 23248597 ~ 23257398 (+) | False | tprg1l |
| TU163261 | lncRNA | downstream | 131513 | 24121610 ~ 24124569 (+) | True | G138239 |
| TU163307 | lncRNA | downstream | 372852 | 24362949 ~ 24363761 (+) | True | G138280 |
| TU163604 | lncRNA | downstream | 511989 | 24502086 ~ 24502371 (+) | True | G138535 |
| TU163649 | lncRNA | downstream | 656682 | 24646779 ~ 24647451 (+) | True | G138578 |
| TU163669 | lncRNA | downstream | 740890 | 24730987 ~ 24755138 (+) | True | LOC113533328 |
| XM_034306735.1 | mRNA | upstream | 708 | 23956508 ~ 23989190 (+) | True | prickle3 |
| XM_026925878.2 | mRNA | upstream | 38648 | 23935124 ~ 23951250 (+) | True | plp2 |
| XM_026925132.2 | mRNA | upstream | 58382 | 23920277 ~ 23931516 (+) | True | sypb |
| XM_026925379.2 | mRNA | upstream | 70548 | 23896065 ~ 23919350 (+) | True | cacna1fa |
| XM_026925380.2 | mRNA | upstream | 70548 | 23896065 ~ 23919350 (+) | False | cacna1fa |
| XM_034306288.1 | mRNA | downstream | 710 | 23990807 ~ 23996817 (+) | False | fam110a |
| XM_026925082.2 | mRNA | downstream | 1504 | 23991601 ~ 23996817 (+) | True | fam110a |
| XM_026925083.2 | mRNA | downstream | 1765 | 23991862 ~ 23996817 (+) | False | fam110a |
| XM_034306404.1 | mRNA | downstream | 6957 | 23997054 ~ 24010074 (+) | True | mfsd2al2 |
| XM_034306403.1 | mRNA | downstream | 6957 | 23997054 ~ 24010074 (+) | False | mfsd2al2 |
| TU162995 | other | upstream | 232784 | 23750417 ~ 23757114 (+) | True | G138010 |
| XR_004578528.1 | other | upstream | 465922 | 23514586 ~ 23523976 (+) | False | pabpc1l |
| XR_004578647.1 | other | upstream | 730445 | 23248348 ~ 23259453 (+) | False | tprg1l |
| trnaa-ugc_5 | other | upstream | 2299406 | 21690421 ~ 21690492 (+) | True | trnaa-ugc_5 |
| trnaa-ugc_4 | other | upstream | 2299802 | 21690025 ~ 21690096 (+) | True | trnaa-ugc_4 |
| TU163200 | other | downstream | 21520 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| TU163201 | other | downstream | 21520 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| trnae-cuc_21 | other | downstream | 1281512 | 25271609 ~ 25271680 (+) | True | trnae-cuc_21 |
| TU164394 | other | downstream | 1919478 | 25909575 ~ 25916798 (+) | True | LOC117597866 |
| TU164395 | other | downstream | 1925993 | 25916090 ~ 25916798 (+) | False | LOC117597866 |
