RNA id: TU163261


Basic Information

Item Value
RNA id TU163261
length 2847
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G138239
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24121610 ~ 24124569 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTAGTGTAGGGATGATCTTCAGCAGGATCTCAGCTACAGTCGGGATGTCTGCGTTGATGCTCAGGATCCTTTGAGGTGTGCCATTGTGTTTCATCACACAAAAGACATGAGAGTGAGAATGACTATTAGACATGTGGTGAGTACTTGTGGGTCATTGCACTCAGTGTGCCCGCTGTGCTGTGTATTAATGATATTGTCATGCACTCCCTCATGCACAGAAAAGGAGTGATGAGccacagagaaagaagaaagcaaaaataatacagTGAGGCTCCTTCCGGTCCCTGAAAAAGCAGGGTGGAGGAGAAGAGGTGTGCACTGTATGATAAAGGAGTACTTGAAAGCTTTAGCacataaaaaaacaggaaactgagTGGACcaagagacacagaaagaagaATCTAATGTAAGTGTAATGAGTAAATGAAGCAAGAAGTCCTTTAGTGTTACAGGAATGAGCGACAGCATttgaaacaaacagagagattGATGAGGGGATGCATGGCATGGATCactggcaatttttttttaggctttCCAAATAAGCCAAACAACATATCACAATACAAAGAAGAGAGAAgtaattaatgcattttgtaCTGCTCCATCACCCTTATATAATAAATCTCATTGTTGCATTAGGAATAAATGTTAACTTGTTAAAATTATGCTCTGCAAATATTTCACTGAATCTCTAACAGGTCAAATGAAGCACTTTTAATACAACTTCTGGTCTTTTTGATTAAGGACGGAAAGAAAAAGGGGTCAGAGTCATTAAACGACTGAGATGACAGTACAGGCACTTTGCATAACATTATGGCACTTAAGACTGACAGTCATGACATCACTGTAACCATATTTATGAGAGGAGGTTTATGGCAGTAGGGAGTTATCTGGTACATGAAggacatcattaacagtactgATATAGTCAGTAACAGTGTGGATAGTATTTGGAGGTTGGAGTATCTTGAGTGGCACGTACCGCTCGGGCCCACTGCTGTCTGGGACTGACACAGTGGCATTGTACTGCAGGGgcggggccaagcacccagagcAATCAAGTAAGGCGCCCAAAAGGAATGGGCGCGATTATGGGCAGGGCCAACCAGGGAGTCAGGAGGTCAGGCAGCAACGCAGGTGGGCGGGACATGTCGATCCAGAATATTGGaattggccaaaaaaaaaaaaaataaacaacaaatacaaaaacaaggaaaaaggGGGAGAGGGAGTGGAAGAGGAGTAcaatttttaattgtaaaaaaatgtcagtgtgaTTTCATATTCTGATATTGCTGGAGGAAAATGGAGGACAGGACAAGAAGAGAGCAATGAATATGTATTTTTGGCCTGTATAAATTACTTTCAGTAATTATCTTGCTGTAATTCAAAGTTAAAGAGtacatttcacatgaaaacacaaataatgACCACAAAGTATAACATTCTAAGAATTTTCCCCAGTACTCCAGAAACTAAAActctaataaaaacattataattatgGACCAGGGAAACAAAGATGAGATTATAAGttattgttttttcctttaaacatATTAAGCcagctttacactgtacaatatTCGGCCCGATATTTTGCTGTCTCAGGCACCGTCACACATCGTATAGGATAATCTTTGATTGGGAGTTGAGTTTGATGGTCTTAAAATGCATAATGCGACGGCGTGCTCAATGGTGTCCAATTTAGTGCAGCTGCGACCGAAGACAGCTCacgacaaagttctggcagaaAACTGCTTCTGTGACCGCTGCTACGACACTCCTAAAATCTTCCCAGTAAAACAACAGCATATGcttacacaaaactcacaggacagctacaaacacGGTAGTGGCAATGgcgaaatgtaaacaaaacatatggGATTTAAAAGAAGAGCAGTTTGTTGAATTGCAGCAGCAGACAGAATGTCTCTATAACGTCTCATCACGGTTAAACCATGACAGGAAAATAAGGGAGGCGACATGGAAAGAAAGAGGATGAATTAGAGCTTCCAGGTGtgtagctagctatttagcaTGCAAACGTTCTGTTCACagagtttatttactattatgacatgaaactatttttatgctttccagTTGAAGAGCTACAAACTTGTGGTGAGTCGCAGTGCACCCAGTACGGTagaacatgtaactatcttcatCTGACAATCTTTAATCTgacacacagaacacattatCGCACAGAATTTCTACCAGGATCATCTCGTACAGTGTGAGAAGCAATAGTCGTAAAAGCCGCTGGAACCGCACAGTGTAAAACCGGCTTGAGAAACACTCAAGGCTAATCTCGATCCACCCTGTGTAGTATGTGCGATTACCATGGACAAGAATGAACCTGTATccctgcactgagaaaagaacagacatGTTTCTTCAACTTTATCAATGTGTCATGAGTCAACAGGTTTCCTGTTCTTTCATCAGTAAAGAGAAACGAGTGTCTGTGGTGATCACGCAGAGTCTACAAGCGGTGGCTggagattagattagcaaagcattATTTAAACATTGAACAAAAAAAGTGTGCTCTGCCTACCACAGATCTCTACGTACGTGTGATTGTGAACATGCAGGGCACAAACAATGAAAAGTCATTTACTCACATCAGTGCGCAGAGCTTTAATGTTCTTGCCCCCCTTTCCGATCACAGCTCCAGCATTTTGCTCTGTAACAGCACACGCAGTTCCACCATGTCATCAGATTTCCGCGAGCGCTTATATGTTGGCTCGTCATCAGCGTCCTGTGCAGGGCGCTTAcctgaaatacacaaatacaaactataATAATCACAGCATATGTGGATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163191 lncRNA upstream 131513 23989898 ~ 23990097 (+) True G138176
TU163176 lncRNA upstream 226894 23890430 ~ 23894716 (+) False praf2
TU163000 lncRNA upstream 371242 23747463 ~ 23750368 (+) True G138014
TU162558 lncRNA upstream 859619 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 860913 23248389 ~ 23260697 (+) False tprg1l
TU163307 lncRNA downstream 238380 24362949 ~ 24363761 (+) True G138280
TU163604 lncRNA downstream 377517 24502086 ~ 24502371 (+) True G138535
TU163649 lncRNA downstream 522210 24646779 ~ 24647451 (+) True G138578
TU163669 lncRNA downstream 606418 24730987 ~ 24755138 (+) True LOC113533328
XR_004578576.1 lncRNA downstream 627471 24752040 ~ 24754872 (+) False LOC113533328
XM_026925872.2 mRNA upstream 64413 24037830 ~ 24057197 (+) True rasef
XM_026925446.2 mRNA upstream 107829 24011582 ~ 24013781 (+) True fkbp1aa
XM_026925447.2 mRNA upstream 107829 24011582 ~ 24013781 (+) False fkbp1aa
XM_034306404.1 mRNA upstream 111536 23997054 ~ 24010074 (+) True mfsd2al2
XM_034306403.1 mRNA upstream 111536 23997054 ~ 24010074 (+) False mfsd2al2
XM_026925553.2 mRNA downstream 2612 24127181 ~ 24130504 (+) True rmi1
XM_034306352.1 mRNA downstream 3591 24128160 ~ 24130504 (+) False rmi1
XM_026925653.2 mRNA downstream 13572 24138141 ~ 24189458 (+) True ntrk2a
XM_026925654.2 mRNA downstream 13572 24138141 ~ 24189458 (+) False ntrk2a
XM_026925655.2 mRNA downstream 13572 24138141 ~ 24189458 (+) False ntrk2a
TU163200 other upstream 107884 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 107884 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 364496 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 597634 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 862157 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 1147040 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 1785006 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 1791521 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 2329903 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 2330053 26454622 ~ 26457276 (+) False car15

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU244902 True 1790 lncRNA 0.44 3 CI01000050 5011721 ~ 5015987 (-)
striped catfish (Pangasianodon hypophthalmus) TU244902 True 2549 lncRNA 0.41 2 NC_047607.1 6790822 ~ 6793398 (+)