Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU163307 |
| length | 813 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G138280 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 24362949 ~ 24363761 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU163261 | lncRNA | upstream | 238380 | 24121610 ~ 24124569 (+) | True | G138239 |
| TU163191 | lncRNA | upstream | 372852 | 23989898 ~ 23990097 (+) | True | G138176 |
| TU163176 | lncRNA | upstream | 468233 | 23890430 ~ 23894716 (+) | False | praf2 |
| TU163000 | lncRNA | upstream | 612581 | 23747463 ~ 23750368 (+) | True | G138014 |
| TU162558 | lncRNA | upstream | 1100958 | 23257671 ~ 23261991 (+) | False | tprg1l |
| TU163604 | lncRNA | downstream | 138325 | 24502086 ~ 24502371 (+) | True | G138535 |
| TU163649 | lncRNA | downstream | 283018 | 24646779 ~ 24647451 (+) | True | G138578 |
| TU163669 | lncRNA | downstream | 367226 | 24730987 ~ 24755138 (+) | True | LOC113533328 |
| XR_004578576.1 | lncRNA | downstream | 388279 | 24752040 ~ 24754872 (+) | False | LOC113533328 |
| XR_004578578.1 | lncRNA | downstream | 388780 | 24752541 ~ 24783425 (+) | False | LOC113533328 |
| XM_026925865.2 | mRNA | upstream | 1024 | 24317883 ~ 24361925 (+) | False | pcsk5b |
| XM_026925866.2 | mRNA | upstream | 1024 | 24318473 ~ 24361925 (+) | True | pcsk5b |
| XM_026925868.2 | mRNA | upstream | 22400 | 24317883 ~ 24340549 (+) | False | pcsk5b |
| XM_026925870.2 | mRNA | upstream | 22400 | 24317883 ~ 24340549 (+) | False | pcsk5b |
| XM_034306605.1 | mRNA | upstream | 52825 | 24296087 ~ 24310124 (+) | False | ubap2b |
| XM_026925576.2 | mRNA | downstream | 8996 | 24372757 ~ 24375520 (+) | True | LOC113533424 |
| XM_026925751.2 | mRNA | downstream | 29818 | 24393579 ~ 24395844 (+) | True | foxb2 |
| XM_026925010.2 | mRNA | downstream | 44413 | 24408174 ~ 24430869 (+) | True | LOC113533124 |
| XM_026925320.2 | mRNA | downstream | 70968 | 24434729 ~ 24465696 (+) | True | inpp5l |
| XM_026925714.2 | mRNA | downstream | 111825 | 24475586 ~ 24482568 (+) | True | LOC113533523 |
| TU163200 | other | upstream | 349223 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| TU163201 | other | upstream | 349223 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| TU162995 | other | upstream | 605835 | 23750417 ~ 23757114 (+) | True | G138010 |
| XR_004578528.1 | other | upstream | 838973 | 23514586 ~ 23523976 (+) | False | pabpc1l |
| XR_004578647.1 | other | upstream | 1103496 | 23248348 ~ 23259453 (+) | False | tprg1l |
| trnae-cuc_21 | other | downstream | 907848 | 25271609 ~ 25271680 (+) | True | trnae-cuc_21 |
| TU164394 | other | downstream | 1545814 | 25909575 ~ 25916798 (+) | True | LOC117597866 |
| TU164395 | other | downstream | 1552329 | 25916090 ~ 25916798 (+) | False | LOC117597866 |
| XR_004578635.1 | other | downstream | 2090711 | 26454472 ~ 26461875 (+) | False | car15 |
| TU164784 | other | downstream | 2090861 | 26454622 ~ 26457276 (+) | False | car15 |
