Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578577.1 |
| length | 691 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 4 |
| gene id | LOC113533328 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 24730987 ~ 24783425 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0008483 | transaminase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU163649 | lncRNA | upstream | 105218 | 24646779 ~ 24647451 (+) | True | G138578 |
| TU163604 | lncRNA | upstream | 250298 | 24502086 ~ 24502371 (+) | True | G138535 |
| TU163307 | lncRNA | upstream | 388908 | 24362949 ~ 24363761 (+) | True | G138280 |
| TU163261 | lncRNA | upstream | 628100 | 24121610 ~ 24124569 (+) | True | G138239 |
| TU163191 | lncRNA | upstream | 762572 | 23989898 ~ 23990097 (+) | True | G138176 |
| XR_003403403.2 | lncRNA | downstream | 93196 | 24848068 ~ 24849544 (+) | True | LOC113533216 |
| TU164017 | lncRNA | downstream | 377869 | 25132741 ~ 25134251 (+) | False | LOC113533115 |
| TU164055 | lncRNA | downstream | 522425 | 25277297 ~ 25284948 (+) | True | G138907 |
| XR_004578607.1 | lncRNA | downstream | 555033 | 25309905 ~ 25333613 (+) | True | LOC113533374 |
| XR_004578606.1 | lncRNA | downstream | 555033 | 25309905 ~ 25333613 (+) | False | LOC113533374 |
| XM_026925262.2 | mRNA | upstream | 40583 | 24693337 ~ 24712086 (+) | True | rab11fip1a |
| XM_026925600.2 | mRNA | upstream | 61229 | 24632224 ~ 24691440 (+) | True | adgra2 |
| XM_034306723.1 | mRNA | upstream | 128513 | 24562377 ~ 24624156 (+) | False | pdlim2 |
| XM_026925769.2 | mRNA | downstream | 123914 | 24878786 ~ 24925439 (+) | True | vps13a |
| XM_026925772.2 | mRNA | downstream | 123914 | 24878786 ~ 24925439 (+) | False | vps13a |
| XM_026925771.2 | mRNA | downstream | 123914 | 24878786 ~ 24925439 (+) | False | vps13a |
| XM_026925775.2 | mRNA | downstream | 123914 | 24878786 ~ 24925439 (+) | False | vps13a |
| XM_026925774.2 | mRNA | downstream | 123914 | 24878786 ~ 24921273 (+) | False | vps13a |
| TU163200 | other | upstream | 738943 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| TU163201 | other | upstream | 738943 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| TU162995 | other | upstream | 995555 | 23750417 ~ 23757114 (+) | True | G138010 |
| XR_004578528.1 | other | upstream | 1228693 | 23514586 ~ 23523976 (+) | False | pabpc1l |
| XR_004578647.1 | other | upstream | 1493216 | 23248348 ~ 23259453 (+) | False | tprg1l |
| trnae-cuc_21 | other | downstream | 516737 | 25271609 ~ 25271680 (+) | True | trnae-cuc_21 |
| TU164394 | other | downstream | 1154703 | 25909575 ~ 25916798 (+) | True | LOC117597866 |
| TU164395 | other | downstream | 1161218 | 25916090 ~ 25916798 (+) | False | LOC117597866 |
| XR_004578635.1 | other | downstream | 1699600 | 26454472 ~ 26461875 (+) | False | car15 |
| TU164784 | other | downstream | 1699750 | 26454622 ~ 26457276 (+) | False | car15 |
