RNA id: XM_026924976.2


Basic Information

Item Value
RNA id XM_026924976.2
length 424
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC113533115
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25132741 ~ 25134258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagagagagagagagcgagaggagagggagaagcTGGAGTGCTATAAGAGGCCTGCTGTTGAGAGCAAATGCATCAGATTGTAGAGCTCATCACTGTGAAGAGCAGAAGAACTGTCTGCAGGGTGACTGATCAAGGATGTGTGTAAAGCGAGCACTCTGGtggatggtggtgtgtgttgtggtgcTGCAGGTGAGCTCTCAGCACTGGTCTCATGGCCTCAATCCTGGAGGAAAGCGTGCAGCGTTACAGGAGactgttGAAGAAATGCCAAGGACCTCTGGCTACGTGTGCGATTATGTAGACGTTTCACCTCGgaataaactctacagactgaaAGATCTGTTGACCAGCGTTGCTGAGAGAGAAATTGGACAGTAAGATGAATAACAAAACTGATCTTCAATAAAATGCTTCGCCTTTA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403403.2 lncRNA upstream 283201 24848068 ~ 24849544 (+) True LOC113533216
XR_004578578.1 lncRNA upstream 349320 24752541 ~ 24783425 (+) False LOC113533328
TU163669 lncRNA upstream 377607 24730987 ~ 24755138 (+) True LOC113533328
TU164055 lncRNA downstream 143039 25277297 ~ 25284948 (+) True G138907
XR_004578607.1 lncRNA downstream 175647 25309905 ~ 25333613 (+) True LOC113533374
XR_004578606.1 lncRNA downstream 175647 25309905 ~ 25333613 (+) False LOC113533374
XR_004578605.1 lncRNA downstream 286796 25421054 ~ 25428188 (+) True LOC117597843
TU164115 lncRNA downstream 314357 25448615 ~ 25451577 (+) True G138961
XM_026925926.2 mRNA upstream 1038 25123601 ~ 25131707 (+) True kctd9a
XM_026925610.2 mRNA upstream 33083 25083550 ~ 25099662 (+) True npy8br
XM_026925805.2 mRNA upstream 107273 25021883 ~ 25025472 (+) True tbx16
XM_034306687.1 mRNA upstream 119631 24954083 ~ 25013114 (+) True cabin1
XM_034306686.1 mRNA upstream 120548 24954083 ~ 25012197 (+) False cabin1
XM_034306325.1 mRNA downstream 21031 25155289 ~ 25157804 (+) True ankrd39
XM_026925631.2 mRNA downstream 21031 25155289 ~ 25157804 (+) False ankrd39
XM_026925629.2 mRNA downstream 21031 25155289 ~ 25157804 (+) False ankrd39
XM_026925630.2 mRNA downstream 21031 25155289 ~ 25157804 (+) False ankrd39
XM_026925144.2 mRNA downstream 49233 25183491 ~ 25219039 (+) False fgfr1a
TU163200 other upstream 1119019 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 1119019 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 1375631 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 1608769 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1873292 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 137351 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 775317 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 781832 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 1320214 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 1320364 26454622 ~ 26457276 (+) False car15

Expression Profile