RNA id: TU164785


Basic Information

Item Value
RNA id TU164785
length 2059
lncRNA type sense_over
GC content 0.43
exon number 5
gene id car15
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26400191 ~ 26462321 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggaggacgaggagcaAATAAAAGCGAAGAAGAAGAGCTTTAACGGCGTTGCCGCTCACCTGGAGAGACGCCGCCATCTTGCTGCAGGTGATTTTTGAGAGGATGGCAGTCAGTGGTGTGTGGAGAGTCAGAGTGAAGCATTCAGCAACACCAGCACCCAAATCCCAAGAATAAATTTAGCTGACAAGGTCAAGGTCATCATCCCCAAAAGACCAGGACCTTCAGGAGAAGACACAAAGGTGATGACTTcctgtgtgtgaagtgtgaaacaGTTTAAGTCGTTGTCAGCAAGAGGGAACGTCACCAGCAGAATTTATTCTCATGAGCCACCATGTCCTTGGCATCCAGCAACACCTCCACACCTGTGCCCTCAGTCAGAGCTTCAGAGCTGGGCcacagccacgcccacaaacaGGTGTCTACGTACTTCAGTGCCTCAgtctcctgtaacacacaccggTGCAGGGGAACGATCAAGACCTCATGTCCATGGATGAGTCCGTCTTCCACTCAGgaagGAGTATCGGATTGAAATGCCCTCTGGATAAATCCTGCGCTGGACGTCTACAGTTACGTGTTCTCCTCATCCCTCAGGCCTCCAGGGAgtcatctaacaaacttcacttAAGCTAATAAAGTACTGAACCAGGATGGATGGAGTGTGTATTAGAAACAGTTTCAGAGCAGGACGAGGGATAGTGGTTCTAAATTATGCTTTGGGTAATAAATCTCTTCATGAGTGTTGTGATGTATTCCAGGTAGCGTGATCTTTTGGTCAGAACCTTGTACAGCTCTGTTatatttactctgtgtgtgtgtgtgtttgagtgtgtgttgcaaAGCTTTGGCAGAACTTTTGTTTTCAGTGGGCTTTGGGTCCAGATGTCACCAAATTCCTGTCTGGCCCCCCAGGAAAAGGTGGTAGGTAGGTGGCTTTCAGCCCTTATCCCTCCTGTGTGTGCCAATCCTTGCTCTCTAATCCCTTTCATTATCCTTTCCAGCCTCTCATCACCTTTATCTTTTacctctttttccttctctgtgGTTTGCTGTCTCACATTTTCCCTCCTGTTTCCTctcatttgtcattttgtctATCCTTCCTTCAGGGCTGCACATAAACCCTCAGCAGTGTAAACAGTGCTTCTCGTAGTTCTGCTTTAATCCGTTGTATTGAAAAAAGCTTTCAACTATAATGTTCTATTTTACCTACGTGGCAGGTGTAGGAGTGATTCATGactcatttctgtctttctgtcagaATTTCTTGTACTTTGTAAGTCAAATCTTGTGTCCTTTAGTGGTTTTGCAAGAGTGGTGGCCATTTTAAGAAACAGCTCAAACTTTATAACTTAAGCCCTATTCGGATTGGATTGTTTTCACGTATAGAAATTGGTCGTGCCTAAAtccatcatatcatcatatcagtAATTTTCTTATGGACTGCAGGTACATGTACCTGGAATTAGTATGCCGTATTTTACCTTCCATAAAATGACGagtagaaataaccccaggtaATTTATATCCCATCTGAAATcacatgttggtaaagatttcATTATGTCCTGATGGAAAAGAagtttgcactttttcttcagtgtAAAGATACTCCGGAAAGTGCTCGCTTTTTCTCGTCTCTCGCCAAAACCAAACTGAAACCAGATACTCACTGAGTTTAAAgcagaacagaataaaatatagacaACGTTTAACAGGGCATATCAGAGGAGCAGCACTTTCAGCGTTTCATGAGATCCTAGCACAGGTACAGCCTACAGACTGCACGTgttcatggtcatgtgacctactaataggacaactagctagctacagCGTAGGATAAAATAGTACTTGTAAAATTATGATGCTCTCTTGACGTAGTCTTTAGACTTAATTCTAATCAGAATGCTATTtacatatgcaaaaaaatattaaacaaacccACACAAGGATCTAATTATGCATTTTGAAAACGAGTCATACACTTCCTAATACAAAATTAATTGAACTGTGACTCAATGTATGTTAGTTCTGCCTATAACCACTTGTACAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164434 lncRNA upstream 364058 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 449742 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 585150 25810175 ~ 25815041 (+) True G139172
TU164343 lncRNA upstream 717100 25672518 ~ 25683091 (+) True G139166
TU164300 lncRNA upstream 841526 25557340 ~ 25558665 (+) False egr3
TU164826 lncRNA downstream 89198 26512892 ~ 26519482 (+) True G139551
TU164945 lncRNA downstream 454942 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA downstream 467383 26891077 ~ 26894530 (+) True G139653
TU164991 lncRNA downstream 683235 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA downstream 683235 27106929 ~ 27108878 (+) False G139686
XM_026945866.2 mRNA upstream 2330 26373810 ~ 26397861 (+) True tbc1d10aa
XM_026945688.2 mRNA upstream 28394 26368415 ~ 26371797 (+) True myl7
XM_026945830.2 mRNA upstream 58594 26324416 ~ 26341597 (+) True npc1l1
XM_034307033.1 mRNA upstream 292288 26096658 ~ 26107903 (+) True fahd2a
XM_026945707.2 mRNA upstream 292288 26096658 ~ 26107903 (+) False fahd2a
XM_026945904.2 mRNA downstream 11822 26435516 ~ 26437704 (+) True aplnra
XM_026945908.2 mRNA downstream 30778 26454472 ~ 26462321 (+) False car15
XM_026945911.2 mRNA downstream 30918 26454612 ~ 26462321 (+) False car15
XM_026945910.2 mRNA downstream 30947 26454641 ~ 26462321 (+) False car15
XM_026945909.2 mRNA downstream 30978 26454672 ~ 26462321 (+) False car15
TU164394 other upstream 483393 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other upstream 483393 25916090 ~ 25916798 (+) False LOC117597866
trnae-cuc_21 other upstream 1128511 25271609 ~ 25271680 (+) True trnae-cuc_21
TU163200 other upstream 2386465 24011617 ~ 24013726 (+) False fkbp1aa
XR_004578635.1 other downstream 30778 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 30928 26454622 ~ 26457276 (+) False car15
trnaa-agc other downstream 52584 26476278 ~ 26476350 (+) True trnaa-agc
trnaa-agc_1 other downstream 53111 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc_2 other downstream 53693 26477387 ~ 26477459 (+) True trnaa-agc_2

Expression Profile