RNA id: XM_034306940.1


Basic Information

Item Value
RNA id XM_034306940.1
length 1834
RNA type mRNA
GC content 0.46
exon number 12
gene id car15
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26400191 ~ 26462321 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggaggacgaggagcaAATAAAAGCGAAGAAGAAGAGCTTTAACGGCGTTGCCGCTCACCTGGAGAGACGCCGCCATCTTGCTGCAGGTGATTTTTGAGAGGATGGCAGTCAGTGGTGTGTGGAGAGTCAGAGTGAAGCATTCAGCAACACCAGCACCCAAATCCCAAGAATAAATTTAGCTGACAAGGTCAAGGTCATCATCCCCAAAAGACCAGGACCTTCAGGAGAAGACACAAAGGTGATGACTTcctgtgtgtgaagtgtgaaacaGTTTAAGTCGTTGTCAGCAAGAGGGAACGTCACCAGCAGAATTTATTCTCATGAGCCACCATGTCCTTGGCATCCAGCAACACCTCCACACCTGTGCCCTCAGTCAGAGCTTCAGAGCTGGGCcacagccacgcccacaaacaGGTGTCTACGTACTTCAGTGCCTCAgtctcctgtaacacacaccggTGCAGGGGAACGATCAAGACCTCATGTCCATGGATGAGTCCGTCTTCCACTCAGgaatggGTGAAGTATGCAGTCCTGGATGTCTGCTCTAATATCTGTCCTAACGCTAAATGCCCTCAGTGCTTCGCCGCTTAAAGTGCCACCCCTTAATTACTGCTACACAGAAGACACCTGTAGTCCATATAACTGGGTGAAAACGTTTCCAACCTGCATCGCCAAAGAGACAATGCTGCACTCTCCCATCAACCTGGAACATATTGTTATTAAGAATGACTCCATTGATCCTCTGGAGCTGCGAGGCTTCGGTGTGCCTCAGAAGTCCTGGACTGTAGTCAATGTCCGGGACACTGttgctGTGAAGTTTCAAGCAGGCATGACTGTGAAAGGTGGCAGTATAAAGCATGATTACCAAATCGTAGAGATGAGATTCCACTGGGGTTCAAATACCACCAACGGATCAGAGCATAAACTTGACGATCGCAGGTTTCCTATGGAGatGCAGATTGTGGGCCTTGCTCCTGGATTCTCTGATGTGGAAGCCGCTTCTCTTGTGCAGTCAGGCCTGCTTATGATAGGAATCTTTGTTGATATCGCCTCTGATGagaataaagcatttaaagcCATAGCTCATGCTGTGCTCAACGTGCCGTACCCAGGCGATTCAGTGAGTGTGACTCCTCCAGCGTTGTCGCGCCTCCTTCCTGATAATTATAAATTCTATCAGTATCATGGAGGCCAGACAACTCCGCCCTGCCTCCAGACTGTGACTTGGATTGTGTTTGAGAAGCCCATTTTCATCTCCAGAGAGcagTATTTTCCGTTCATCACACATCTGTTTTACTCCGATAAAAACGACACCGTGAAGAAGTTTTTGGTGGACAACTATCGTTTCATCCAGCCCAGGTTGAACCGCCAAATCTTTGTTTCTTCTGCTGTGAAGATCCGCTCAGCTAGAGGGGCCGCTCCGAGCCAGCACACACTCTTCATCCCCCTCCTCATCCTCACCAGCAAGCTGTCTCTCACAATGCCTTAAACAATGAAGCATTTATCATAATAGTCAGCAGTTTTAAGTAATAAAGCAATAACAGTTTTAAGAGAATGTGCACGGAAGCAACAATGAAGAATAACTAAATGGGGTATGCTTATAAATATGCAGTTTAAGCAGTACAATAAAGAATGCTTTCACTGCGCTGTGGGCTAGTTGGAGTCAAATGACTAATTTCAGGTATTCCACTGCACATTAGCATTGAATGTAGCTCAAACCGCCTTACTATTGTAATATACTATTGTAACATAGTcatccctaaaaaaaaaattttcagttCAGGTCTGTgcaatatttgtttgttttattgattgCTAGTAAACAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164434 lncRNA upstream 364058 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 449742 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 585150 25810175 ~ 25815041 (+) True G139172
TU164343 lncRNA upstream 717100 25672518 ~ 25683091 (+) True G139166
TU164300 lncRNA upstream 841526 25557340 ~ 25558665 (+) False egr3
TU164826 lncRNA downstream 50571 26512892 ~ 26519482 (+) True G139551
TU164945 lncRNA downstream 416315 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA downstream 428756 26891077 ~ 26894530 (+) True G139653
TU164991 lncRNA downstream 644608 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA downstream 644608 27106929 ~ 27108878 (+) False G139686
XM_026945866.2 mRNA upstream 2330 26373810 ~ 26397861 (+) True tbc1d10aa
XM_026945688.2 mRNA upstream 28394 26368415 ~ 26371797 (+) True myl7
XM_026945830.2 mRNA upstream 58594 26324416 ~ 26341597 (+) True npc1l1
XM_034307034.1 mRNA upstream 292288 26096883 ~ 26107903 (+) False fahd2a
XM_026945832.2 mRNA downstream 5998 26468319 ~ 26475491 (+) True hpdb
XM_026945921.2 mRNA downstream 82336 26544657 ~ 26548008 (+) True fzd10
XM_034306351.1 mRNA downstream 100499 26562820 ~ 26567932 (+) True LOC117597788
XM_026945698.2 mRNA downstream 129737 26592058 ~ 26602240 (+) True piwil1
XM_026945700.2 mRNA downstream 129870 26592191 ~ 26602240 (+) False piwil1
TU164394 other upstream 483393 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other upstream 483393 25916090 ~ 25916798 (+) False LOC117597866
trnae-cuc_21 other upstream 1128511 25271609 ~ 25271680 (+) True trnae-cuc_21
TU163200 other upstream 2386465 24011617 ~ 24013726 (+) False fkbp1aa
trnaa-agc other downstream 13957 26476278 ~ 26476350 (+) True trnaa-agc
trnaa-agc_1 other downstream 14484 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc_2 other downstream 15066 26477387 ~ 26477459 (+) True trnaa-agc_2
TU164841 other downstream 100914 26563235 ~ 26566763 (+) False LOC117597788
XR_003404685.2 other downstream 163732 26626053 ~ 26729831 (+) False rimbp2

Expression Profile