RNA id: TU165106


Basic Information

Item Value
RNA id TU165106
length 2819
lncRNA type sense_over
GC content 0.40
exon number 2
gene id nr6a1a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27405450 ~ 27490461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaaagaaagaaagaaagaaatgatgaaTGTGACTAGCAGCTATTTTAtacgtttaatttttttcccctctctctatTTATTACCAGACAGAGCTGAATGTATACTGATGTACACTGCACACAATCGCTGCTGCTCGTACGCAAAATGCACAAACTCCGCAGCAGAGTTTACGCTCGCTCGTCCGACTGCAGAATGTGTTCCCACTGCTAGGGTTAGGAGTTTTGAAATAGTTCACTTTTTGTTGCTCATAGAGACagatatacaaatatatatatatatatacctcaGGTAGAACCTTgatgagctctctctctctctctctctctctctctctctctctctctcgctcactttCTTTCTAACATCCGTCACACGCTACACACTCACAGTGTCAAAAGTCATCAgccaaaaatgaatttatttcactttttactTCCTCAAGTAAGGAAAGATTATAGCCTCCAAACCTAAatcataacatacacacacacacacatacacatacacacacatcacaaaaaaGGTTTATACCTTAACAGGTGCAGTCTGATGTCTGAAGCCAAACTTTTCACATCATCCGAGTCTGAAGAGGAAGAATGCGATTCGGCAAATCCGTTTTTCCCACAACAGCATATCTGATGCTAACACGGTGGCTATAGCTTTCCATTAGTCGTTAGCTAAATTAGCCTTTGTGTAGCTCCAAGGAATTTGGGAAACATGAGTGGAAAGTGGTGAGGAGAGGAGATAAATGTTCAATCACAGCCTGGGGGAAAGATTTGTACCTCACAGCTATATACATGTCTGTTGTTTTTGAGTTAGTTCGCTATTCTTCTCTCTGTAAGGTTGGCAGGGAGCGAGCAAACTGTTCAGCTGAGTGAATCTAAATAAAGAGGACCGCTTAGAGAAAGTGCACCAGCTTGTACCAACAGCGTTTACGTGTTACTCTGTCGTTTCACGTGTCCTCAACTGGCCCTGCTCTCCTTTTTTTCACACTGGacagattatttaaaaacagggTAAAAACAGGCTCTTTTTTTAGACGTCACTCAAGCTCAGATATCACAATGATGTAGGTTTCTAGTTGTAGTAAGGTTGTAGTGTGTAGtaggtggttgttgttgtttttgttttttttttaaatactttttattttctccaggAAAGAAAAGGGGTGTTGTTTTTTCGAAGGGCGTTTGTTCGATGATGTTAAATATCAAACTCCGAAGACCTGATGGTTAGCGGGAGCGGCGTCCTTGGGAACGTCGAGATGTTTTATTGCTAAGCCAAACAGTTGAAACATTCCAAAAATCGtcgagaggaaaaaaaaaaatcagaaaaagtcgaataatgtttacatatttttgCAGCAGACAATGACGAGCAGAGGGTCATAGCGAAGACGGGTGGCTCGGTGATGCCCGGCTCCCCGTCCTCCACCTCAAGGCCTCTCGAATGCAGCTAAATCTCAGTGGTAACGGAACTAAATAATCAGGGAGAAGCACGGATTAAAGGAGAAAAAGGACGTGCTGAGAGTAATGCGCCATTTAGTATTTAGACCAAATGTTACCACTTTATATACCTGCTTCTAAAGAGCAGTTTCATTCATCActtcagtcattttatttttgtctttttgttgttgGACCTTATTCCGTGTTTACTCTCGTAGCTATTATTgtggatggtttttttttttttggtgtttgtaTAGGGTGAAGGCCTATCACTTTTTCCAGCACTCAGTGTTGACGTCTCATTATCAGAGGTCATGCTgaacttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatcgtTGCTCCTATGAGACTGGGCCGAGTAATACGTGAGAGACGGTACACTCGTTCAGCCCGGAAACATTTTTGACATCTTTGGAATAcaaccacacaaacactcacacgcgcgcacacacacacacacacacacacacacacacatcagcttttTGCTTTTAAGTGCTGTCGAACTCTCGAACACGTGTCTCAGAGGTCTATTCGATAAATTGCGCCTGGCAGCTGAGGTTGAGATGCAGGTCCACGAACCTCGTGAAGATTCTCTGAAgctcagggatttttttttttttattcagagatGATTCACTTCATTCAGACCCCTGTACTAAGACCCTTTGTAAGACCCTTTGTAACCTCTGCGTCTTTGTTGATTGATGTTATGTGTCTTGTAGGACTCAATAAGAGAGGCCATTCGCGATTTATTTAGAGCTTGGAAGTTCTCTATAAGCGACGGCTGCATTGTTTAGCGGCATTGAATTTCCCGTTGCAATAGGCCTTTCTCACAAAGCGCTCTCCTGAATGAAGCCTATGATTTTTACTGTgtgttaaactgttaaactgtTATCTGACCTctgaaacattttctttctgaagtttttcttttctatatatTTTGAATTGTCCTTAcaaattgtgtttgtttttttgtttgtacttttttttctccccccttTTGCAATTTCTGCATTGAAACTacctctttttttgtgtgtcatcATGTTGCGTActttcattaaagaaaaaaaaactatttattgGTTTCATAGCACCACTGGACCGTTTCTTTGTGTGTCTCTTATGCCGTTGTAACAGCATGCGTGTTTCGTCAGTAGTGTACTCCGGATCACTAGATGTTTCACTGCTCCGTTCTCTTCGTTCCATTTCCTCAGTGCAATGATGACATCGTCCTTTAAAATAACCAgtattatattttgttgttgtaaacactgtttttttttttttttttttgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165078 lncRNA upstream 112955 27338993 ~ 27341506 (+) True G139756
TU165069 lncRNA upstream 159144 27288476 ~ 27295317 (+) False adam9
TU165045 lncRNA upstream 192720 27183021 ~ 27261741 (+) False fam160b2
TU164991 lncRNA upstream 345583 27106929 ~ 27108878 (+) True G139686
TU165143 lncRNA downstream 71144 27560390 ~ 27569085 (+) True G139807
XR_003404686.2 lncRNA downstream 114671 27603917 ~ 27610560 (+) True LOC113546137
TU165554 lncRNA downstream 121701 27610947 ~ 27611335 (+) True G140170
TU165666 lncRNA downstream 283198 27772444 ~ 27773644 (+) True G140236
TU165668 lncRNA downstream 285491 27774737 ~ 27851332 (+) True G140237
XM_026945720.2 mRNA upstream 84414 27363523 ~ 27370047 (+) True tti2
XM_034306399.1 mRNA upstream 93599 27347381 ~ 27360862 (+) False LOC113546107
XM_034306398.1 mRNA upstream 93599 27347388 ~ 27360862 (+) True LOC113546107
XM_026945831.2 mRNA upstream 93599 27347389 ~ 27360862 (+) False LOC113546107
XM_034306699.1 mRNA upstream 116293 27333371 ~ 27338168 (+) True ppiaa
XM_026945915.2 mRNA downstream 21457 27510703 ~ 27530908 (+) True nr5a1a
XM_034306400.1 mRNA downstream 92562 27581808 ~ 27588404 (+) True fgf17
XM_034306401.1 mRNA downstream 92562 27581808 ~ 27588404 (+) False fgf17
XM_034306402.1 mRNA downstream 92562 27581808 ~ 27588404 (+) False fgf17
XM_026945801.2 mRNA downstream 109168 27598414 ~ 27601456 (+) True tubb2b
TU165116 other upstream 24984 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 724630 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 887698 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 977002 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 977584 26476805 ~ 26476877 (+) True trnaa-agc_1
XR_004578633.1 other downstream 530225 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 1998727 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1999303 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 2000096 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 2000274 29489520 ~ 29489590 (+) True trnag-ccc_2

Expression Profile