RNA id: TU165143


Basic Information

Item Value
RNA id TU165143
length 219
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G139807
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27560390 ~ 27569085 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCAATATTGTGGGAATAAAACTGGTCCGAGTACTGCTCCCTGAGGAACACCGCGGTTTAATCTACACTACACGATGCTCTGCTTTTCCGTTTTGAATGAAGTGTGACGTGATGCGACTCATGCAGGTTTGAACGCTAGCTTGTGTGCACGCCTCAAACATGCCGAGTTAAGAAGACGACTGTATTCATCTAGGAGGGTGTGGAGAGCATCACTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165111 lncRNA upstream 69929 27439761 ~ 27490461 (+) False nr6a1a
TU165108 lncRNA upstream 71144 27428636 ~ 27489246 (+) False nr6a1a
TU165106 lncRNA upstream 71144 27454461 ~ 27489246 (+) False nr6a1a
TU165107 lncRNA upstream 71144 27467716 ~ 27489246 (+) False nr6a1a
TU165078 lncRNA upstream 218884 27338993 ~ 27341506 (+) True G139756
XR_003404686.2 lncRNA downstream 34832 27603917 ~ 27610560 (+) True LOC113546137
TU165554 lncRNA downstream 41862 27610947 ~ 27611335 (+) True G140170
TU165666 lncRNA downstream 203359 27772444 ~ 27773644 (+) True G140236
TU165668 lncRNA downstream 205652 27774737 ~ 27851332 (+) True G140237
TU165687 lncRNA downstream 274809 27843894 ~ 27859701 (+) False dbnlb
XM_026945915.2 mRNA upstream 29482 27510703 ~ 27530908 (+) True nr5a1a
XM_034306583.1 mRNA upstream 72581 27405450 ~ 27487809 (+) False nr6a1a
XM_034306585.1 mRNA upstream 72581 27465274 ~ 27487809 (+) True nr6a1a
XM_034306584.1 mRNA upstream 72581 27465278 ~ 27487809 (+) False nr6a1a
XM_026945720.2 mRNA upstream 190343 27363523 ~ 27370047 (+) True tti2
XM_034306400.1 mRNA downstream 12723 27581808 ~ 27588404 (+) True fgf17
XM_034306401.1 mRNA downstream 12723 27581808 ~ 27588404 (+) False fgf17
XM_034306402.1 mRNA downstream 12723 27581808 ~ 27588404 (+) False fgf17
XM_026945801.2 mRNA downstream 29329 27598414 ~ 27601456 (+) True tubb2b
XM_034306758.1 mRNA downstream 109830 27678915 ~ 27698868 (+) True fkbp15b
TU165116 other upstream 130913 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 830559 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 993627 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1082931 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 1083513 26476805 ~ 26476877 (+) True trnaa-agc_1
XR_004578633.1 other downstream 450386 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 1918888 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1919464 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1920257 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1920435 29489520 ~ 29489590 (+) True trnag-ccc_2

Expression Profile