Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU165678 |
| length | 180 |
| lncRNA type | sense_over |
| GC content | 0.64 |
| exon number | 2 |
| gene id | arpc5la |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 28019184 ~ 28027450 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU165680 | lncRNA | upstream | 77156 | 27930723 ~ 27942087 (+) | True | G140244 |
| TU165672 | lncRNA | upstream | 83425 | 27931210 ~ 27935818 (+) | True | G140240 |
| TU165687 | lncRNA | upstream | 159542 | 27843894 ~ 27859701 (+) | False | dbnlb |
| TU165668 | lncRNA | upstream | 167911 | 27774737 ~ 27851332 (+) | True | G140237 |
| TU165666 | lncRNA | upstream | 245599 | 27772444 ~ 27773644 (+) | True | G140236 |
| TU165760 | lncRNA | downstream | 103210 | 28124606 ~ 28124811 (+) | True | G140307 |
| TU165764 | lncRNA | downstream | 115215 | 28136611 ~ 28136832 (+) | True | G140311 |
| TU165771 | lncRNA | downstream | 134312 | 28155708 ~ 28155911 (+) | True | G140318 |
| TU165781 | lncRNA | downstream | 150192 | 28171588 ~ 28171793 (+) | True | G140328 |
| TU166087 | lncRNA | downstream | 397724 | 28419120 ~ 28434435 (+) | True | G140574 |
| XM_034306841.1 | mRNA | upstream | 3955 | 28005083 ~ 28015288 (+) | True | LOC117597849 |
| XM_034306842.1 | mRNA | upstream | 3955 | 28005083 ~ 28015288 (+) | False | LOC117597849 |
| XM_026945902.2 | mRNA | upstream | 36160 | 27954282 ~ 27983083 (+) | True | olfml2a |
| XM_034306513.1 | mRNA | upstream | 86014 | 27926636 ~ 27933229 (+) | True | polr3d |
| XM_034306514.1 | mRNA | upstream | 86014 | 27926636 ~ 27933229 (+) | False | polr3d |
| XM_026945918.2 | mRNA | downstream | 32792 | 28054188 ~ 28090793 (+) | True | si:ch211-158d24.2 |
| XM_026945919.2 | mRNA | downstream | 81793 | 28103189 ~ 28110098 (+) | True | LOC113546156 |
| XM_034306290.1 | mRNA | downstream | 175460 | 28196856 ~ 28413159 (+) | True | si:dkeyp-14d3.1 |
| XM_034306292.1 | mRNA | downstream | 281959 | 28303355 ~ 28413159 (+) | False | si:dkeyp-14d3.1 |
| XM_034306294.1 | mRNA | downstream | 304085 | 28325481 ~ 28413159 (+) | False | si:dkeyp-14d3.1 |
| TU165116 | other | upstream | 589766 | 27428727 ~ 27429477 (+) | True | G139781 |
| XR_003404685.2 | other | upstream | 1289412 | 26626053 ~ 26729831 (+) | False | rimbp2 |
| TU164841 | other | upstream | 1452480 | 26563235 ~ 26566763 (+) | False | LOC117597788 |
| trnaa-agc_2 | other | upstream | 1541784 | 26477387 ~ 26477459 (+) | True | trnaa-agc_2 |
| trnaa-agc_1 | other | upstream | 1542366 | 26476805 ~ 26476877 (+) | True | trnaa-agc_1 |
| trnag-ccc_1 | other | downstream | 1466577 | 29487973 ~ 29488043 (+) | True | trnag-ccc_1 |
| trnar-ucg_2 | other | downstream | 1467153 | 29488549 ~ 29488621 (+) | True | trnar-ucg_2 |
| trnar-ucg_3 | other | downstream | 1467946 | 29489342 ~ 29489414 (+) | True | trnar-ucg_3 |
| trnag-ccc_2 | other | downstream | 1468124 | 29489520 ~ 29489590 (+) | True | trnag-ccc_2 |
| trnar-ucg_4 | other | downstream | 1468719 | 29490115 ~ 29490187 (+) | True | trnar-ucg_4 |
