RNA id: TU165680


Basic Information

Item Value
RNA id TU165680
length 1367
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G140244
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27930723 ~ 27942087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaggtcttgcGTGATAGTATggtgaaaaaaggaaatgtagACAGGTATGTTAGTTATGCttgatgtttgcttctttagcttTAAACCGTTACACGACTCCGAAGCGTTTATGACAACGTACGACACACTGATGTCGataaaattgagaaaaatgTTGTGAACATGAGTCAGgctgtaaataatttacactacagtttggtgatttttaACGTGCACTACTTTATAAATCTGCTTACTGCTTATATTTCACTTCTGGTCAAAGTGTTTACTCAACCAACATGAAAAACACTCAACACCTAAACAGTGTCAGTTTCTCTGAATGAGAAAGTTGGTGCACTAgagcctttcgcaccgctttagttccagcactaaatttacaggacttaaGTACTGGGTGATTTTGcgcgaactatttcccagtaccgtttaaagggttgcattcgcaccgacagcgggcactaggaagtgacgtaagccggtcgacagcgacgtcatttgtgcgcggcgttcaacaacggaaacaaagaacaacaacgtaaacaaccggaggatggaggacgctgtgatcggagctgtgtttttgttgtgtctcgcggGTTTCACAATAATGGACATGGAATATCGACGTATACGTAAATCGaaataagtcgacactacagtatgtttacacggcgttttaaatcatggcaggTGAGAgcgttttcgtacgcgtttggccaatcaacgtctacttacatCACGGagagtaccagttgtgctggttagaccctgctttagagtaggagctcatttggttcttgaaaaaggcagtcgggactaaaatcacacccagttccggaggtgcgaaaacaccaaaaagtgggtagttccacaattagttcaggtactatgaaaaggttcccgcaaTGCGAAAGGCCCTTCTGTGTTGTGTGAGACTgatcgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgacctGCAGCTGCAGTAAGGCGCTCTGTATGAAGCAGGCTTGCGGGTCGTCCTGTTCCTGCTTCAGCTGAGCCTGCAGTGCCGCTCTCTCCTCCGCTAGCAGACCCAGAACCTGATCCTGAGACGCCAGCAGCAGCTTGGAATAAGAGCTCAGACGCACATctgcaacaaacacacacgaagaaacacacaaacttatcaaaaatacacacaatgcaCATAGCATATCTGTTGAAAGAACCTATAATTAatcaaaaatgcaaacatttgtcTTCTGGAGAACTAAAAGCCAAACGAAGAGTTTTATTTATCTCCAGCACACAGCTTCTCACCTCCAAAGCGAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165687 lncRNA upstream 71022 27843894 ~ 27859701 (+) False dbnlb
TU165668 lncRNA upstream 79391 27774737 ~ 27851332 (+) True G140237
TU165666 lncRNA upstream 157079 27772444 ~ 27773644 (+) True G140236
TU165554 lncRNA upstream 319388 27610947 ~ 27611335 (+) True G140170
XR_003404686.2 lncRNA upstream 320163 27603917 ~ 27610560 (+) True LOC113546137
TU165678 lncRNA downstream 77156 28019243 ~ 28021396 (+) False arpc5la
TU165760 lncRNA downstream 182519 28124606 ~ 28124811 (+) True G140307
TU165764 lncRNA downstream 194524 28136611 ~ 28136832 (+) True G140311
TU165771 lncRNA downstream 213621 28155708 ~ 28155911 (+) True G140318
TU165781 lncRNA downstream 229501 28171588 ~ 28171793 (+) True G140328
XM_034306265.1 mRNA upstream 26091 27898573 ~ 27904632 (+) True gins4
XM_026945709.2 mRNA upstream 33465 27876195 ~ 27897258 (+) True arid5a
XM_034306669.1 mRNA upstream 71021 27838245 ~ 27859702 (+) False dbnlb
XM_034306670.1 mRNA upstream 71021 27838245 ~ 27859702 (+) False dbnlb
XM_034306668.1 mRNA upstream 71021 27838246 ~ 27859702 (+) True dbnlb
XM_026945902.2 mRNA downstream 12195 27954282 ~ 27983083 (+) True olfml2a
XM_034306841.1 mRNA downstream 62996 28005083 ~ 28015288 (+) True LOC117597849
XM_034306842.1 mRNA downstream 62996 28005083 ~ 28015288 (+) False LOC117597849
XM_026945903.2 mRNA downstream 77097 28019184 ~ 28027450 (+) True arpc5la
XM_026945918.2 mRNA downstream 112101 28054188 ~ 28090793 (+) True si:ch211-158d24.2
TU165116 other upstream 501246 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1200892 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1363960 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1453264 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 1453846 26476805 ~ 26476877 (+) True trnaa-agc_1
XR_004578633.1 other downstream 77384 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 1545886 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1546462 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1547255 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1547433 29489520 ~ 29489590 (+) True trnag-ccc_2

Expression Profile