RNA id: XM_034306670.1


Basic Information

Item Value
RNA id XM_034306670.1
length 2493
RNA type mRNA
GC content 0.47
exon number 14
gene id dbnlb
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27838245 ~ 27859702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCGAGCGCTTCCGGTAGGCGTGGCTCAGCTCCCCAGCTCCCGAGTCtcactgtgctgtgtgtaaacCTTGTTTTCAGTTAAGGACTCggtttatttgtattattattattattttttacacttaGAATGGCTGTGAATTTGAGTAAAAACGGTCCAGCGCTCACAGCCGCCTATAAAGAGGTGGTGGATGAGAAATCCGAGACTAACTGGGCCTTTGTTCACCTACGAAGGCAACACCAATGATATCCGGCTGGCCGGTAAAGGGGaggaaGGGCTGGAGGAGCTGGTGGAGGAGTTGAACAGCGGGAAGGTGATGTACGCATTCTGCCGGGTCAAAGACCCCAACTCCGGCCTCCCTAAATACGTCCTGATCAACTGGactGGCGAGGGTGTGAAAGACGCCAGGAAAGGACTGTGTGCCAACCATGTTAGCTCCATGGCTAATTTTCTGAAGgGAGCACATGTGACTATAAACGCTCGTGCAGAGGAGGACGTGGAACCCGAATCCATCATGCAGAAAGTGGCCAAGGCTTCAGGAGCCAATTACAGTTTCCACAAAGAGTCCAACCGCTTCAGAGACACGGGACCACAGGGGCCTGtgGGTTCTGTGTATCAGAAGACCAACGCAATGTCCGAAATCAAGAGAACCAACAAGGATAACTTCTGGGCGCAGGCggagaAAGACGAGGAGAAGCGCCGtcaggaggagaagaagaaggtggCGGAGGAGCGGCAGCAGCTGGAGAAGGAGAGGAAAGATCGGGAGGCCAAGGAGGCGACGCTGAGGGAGAGGGCGGCCAAAGAGAGAGCCTCCCAGATCGACGAGCAGAGgagGTACCAGCAGCAGCTCGAGAGTCAGCAGAAAAAACAGCAGGAGGCAGCTGCTCTCATCTCCCAGCGTTCTGTGAACCCCAGAGAAATGTTCCAGCAGAGGGAGAAAGGCATAGCAGCCAGCAACACAGACAACACACCATCCAGCCCACAGCCTgggcgGTTGAAAAGCCCTTTTCTGTCTAAGCAGCCTTATGAGCCTGAGCCGTCTCGCTCTCCTGTGCGCCAAGCCTCACCTGTACGAgccacagaAACCAGAGTTGTGGAGTCTCACACTGATTACGAGGAACCAGATGCTGATGCAGAGTACGAAgacGTGGATGTGGTCAGTGAACAGTACAGCTCTCATGTGGAACAGCAGCAGTATGAAGCAGCAAAGGAACCGGAGAACCTTTATGAGGAGCCACAACAggtggaGGAGCAGAACGTGTATGAAGAATCAGACACGGGTGATCGTGGTACCTGTGCTCGAGCACTGTACGACTACCAGGCAGccgaTGACACGGAGATCTCCTTCGACCCGGACGACATCATTACCGGCATCGAAATGATCGACGAAGGCTGGTGGCGAGGCTACAGTCCGGACGGCCATTTTGGAATGTTCCCGGCCAATTACGTCGAGCTCCTCTAAGTGGCTCAACCAATCACGTCTGGGCGACATTGACGTTGCCCCGCCCACATTTAGTCACGGGTCCGTTATTTGTAATTGGACAGACTGCAACAAAAACCATTGatcaacaaaagaaaagaactcCAATGAAACTCAGTTACAGACTCGACtttttgtactttcttttttttttttgctgttaaacATTCCCTTAAAAACATTAATACTGTGCTCACTGGCTAACAAGAGAATTGTGTGTGTCATGGAGTAAATAGTTGGTGTTATTTTATCATGTTAACCTCAAATATTCCATGGATCTCTTCAgcatttgtgttttatattcctGTACTATtcaatattttcctttttttttcccaatctgGACCAATTCCTGTTTGAGATGATGACGTTTCAGTATCATTGGAAATAACACAGCTATTAGGATTAGAGAGATTTACTTCTGGCGTGAGCTctgaagtcttgttttgccTTGTTTTTGCCTTTTCTGCACATTTTGGAGCAGTgaaatgcctcagctgatgaTCTGAACACAGGTGCTCGAGGAAACTCTATCACTagtctgattattttcctgcgtTTCTTAGCATTTAAGGGACTAAACTGTCACGCTAATCCGACGCACCTTAgcatagccttcctgtctgctctgaaatgtggaaaaaatactgtgattttctttttcttctttaagtTTCAGGGAACAATCATTCAACCATTTTCCTCTTGCCCTTAAgtcataaacagatttattttttttttggctaccCTTtgcattgactttttttttttttcttttctttttttaattaatttacaccACATTTTGTCAATTTGCACAGCTCTTGAAAACCCACACGGTTATTTGCTGTGCCAATAGGAGTGCGACTGAGtgaaaatgatgttttattttttaaaaatgtaacattagaTTGTATGGAGAGTGATCATCTGACCACCAGCGGGAGCCTGGTTCCTTCAGATTATTGTGATCTTTAATCAGAAAGATgaaataaaggaaatgaaaatgca

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165666 lncRNA upstream 64601 27772444 ~ 27773644 (+) True G140236
TU165554 lncRNA upstream 226910 27610947 ~ 27611335 (+) True G140170
XR_003404686.2 lncRNA upstream 227685 27603917 ~ 27610560 (+) True LOC113546137
TU165143 lncRNA upstream 269160 27560390 ~ 27569085 (+) True G139807
TU165107 lncRNA upstream 348999 27467716 ~ 27489246 (+) False nr6a1a
TU165680 lncRNA downstream 71021 27930723 ~ 27942087 (+) True G140244
TU165672 lncRNA downstream 71508 27931210 ~ 27935818 (+) True G140240
TU165678 lncRNA downstream 159541 28019243 ~ 28021396 (+) False arpc5la
TU165760 lncRNA downstream 264904 28124606 ~ 28124811 (+) True G140307
TU165764 lncRNA downstream 276909 28136611 ~ 28136832 (+) True G140311
XM_026945829.2 mRNA upstream 6867 27822537 ~ 27831378 (+) True ube2d4
XM_034306758.1 mRNA upstream 139377 27678915 ~ 27698868 (+) True fkbp15b
XM_034306759.1 mRNA upstream 139377 27678915 ~ 27698868 (+) False fkbp15b
XM_034306760.1 mRNA upstream 139804 27678915 ~ 27698441 (+) False fkbp15b
XM_026945801.2 mRNA upstream 236789 27598414 ~ 27601456 (+) True tubb2b
XM_026945709.2 mRNA downstream 16493 27876195 ~ 27897258 (+) True arid5a
XM_034306265.1 mRNA downstream 38871 27898573 ~ 27904632 (+) True gins4
XM_034306513.1 mRNA downstream 66934 27926636 ~ 27933229 (+) True polr3d
XM_034306514.1 mRNA downstream 66934 27926636 ~ 27933229 (+) False polr3d
XM_034306515.1 mRNA downstream 66934 27926636 ~ 27933229 (+) False polr3d
TU165116 other upstream 408768 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1108414 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1271482 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1360786 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 1361368 26476805 ~ 26476877 (+) True trnaa-agc_1
XR_004578633.1 other downstream 159769 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 1628271 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1628847 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1629640 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1629818 29489520 ~ 29489590 (+) True trnag-ccc_2

Expression Profile