Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU165771 |
| length | 204 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 1 |
| gene id | G140318 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 28155708 ~ 28155911 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU165764 | lncRNA | upstream | 18876 | 28136611 ~ 28136832 (+) | True | G140311 |
| TU165760 | lncRNA | upstream | 30897 | 28124606 ~ 28124811 (+) | True | G140307 |
| TU165678 | lncRNA | upstream | 134312 | 28019243 ~ 28021396 (+) | False | arpc5la |
| TU165680 | lncRNA | upstream | 213621 | 27930723 ~ 27942087 (+) | True | G140244 |
| TU165672 | lncRNA | upstream | 219890 | 27931210 ~ 27935818 (+) | True | G140240 |
| TU165781 | lncRNA | downstream | 15677 | 28171588 ~ 28171793 (+) | True | G140328 |
| TU166087 | lncRNA | downstream | 263209 | 28419120 ~ 28434435 (+) | True | G140574 |
| TU166269 | lncRNA | downstream | 359659 | 28515570 ~ 28516680 (+) | True | G140748 |
| TU166279 | lncRNA | downstream | 421634 | 28577545 ~ 28744414 (+) | True | G140754 |
| TU166283 | lncRNA | downstream | 421634 | 28577545 ~ 28594444 (+) | False | G140754 |
| XM_026945919.2 | mRNA | upstream | 45610 | 28103189 ~ 28110098 (+) | True | LOC113546156 |
| XM_026945918.2 | mRNA | upstream | 64915 | 28054188 ~ 28090793 (+) | True | si:ch211-158d24.2 |
| XM_026945903.2 | mRNA | upstream | 128258 | 28019184 ~ 28027450 (+) | True | arpc5la |
| XM_034306841.1 | mRNA | upstream | 140420 | 28005083 ~ 28015288 (+) | True | LOC117597849 |
| XM_034306290.1 | mRNA | downstream | 40945 | 28196856 ~ 28413159 (+) | True | si:dkeyp-14d3.1 |
| XM_034306292.1 | mRNA | downstream | 147444 | 28303355 ~ 28413159 (+) | False | si:dkeyp-14d3.1 |
| XM_034306294.1 | mRNA | downstream | 169570 | 28325481 ~ 28413159 (+) | False | si:dkeyp-14d3.1 |
| XM_034306291.1 | mRNA | downstream | 169709 | 28325620 ~ 28413159 (+) | False | si:dkeyp-14d3.1 |
| XM_034306295.1 | mRNA | downstream | 178136 | 28334047 ~ 28413159 (+) | False | si:dkeyp-14d3.1 |
| XR_004578633.1 | other | upstream | 128258 | 28019471 ~ 28027450 (+) | False | arpc5la |
| TU165116 | other | upstream | 726231 | 27428727 ~ 27429477 (+) | True | G139781 |
| XR_003404685.2 | other | upstream | 1425877 | 26626053 ~ 26729831 (+) | False | rimbp2 |
| TU164841 | other | upstream | 1588945 | 26563235 ~ 26566763 (+) | False | LOC117597788 |
| trnaa-agc_2 | other | upstream | 1678249 | 26477387 ~ 26477459 (+) | True | trnaa-agc_2 |
| trnag-ccc_1 | other | downstream | 1332062 | 29487973 ~ 29488043 (+) | True | trnag-ccc_1 |
| trnar-ucg_2 | other | downstream | 1332638 | 29488549 ~ 29488621 (+) | True | trnar-ucg_2 |
| trnar-ucg_3 | other | downstream | 1333431 | 29489342 ~ 29489414 (+) | True | trnar-ucg_3 |
| trnag-ccc_2 | other | downstream | 1333609 | 29489520 ~ 29489590 (+) | True | trnag-ccc_2 |
| trnar-ucg_4 | other | downstream | 1334204 | 29490115 ~ 29490187 (+) | True | trnar-ucg_4 |
