RNA id: TU166279


Basic Information

Item Value
RNA id TU166279
length 1885
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id G140754
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28577545 ~ 28744414 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAAATGTTGTCTAagctaaatgaaatattttagaataaacTAATTGACTCTCCTGAATAAAAGCACCGACGTATAAAGTCAAAATTATTCATCACacttaaattttcatttttaaaatcattttattattatttatgcattgcttcttttttttccagtggaAATGAAGTTCCCCACCCCAAACTCAAATTCTCCACTTAAGCTTGAAATAAGTTCATAATCCATAATCTAAAAGTAATTACTCCTCAGAAATACAGCAGGATTAAAAGTTTACTAATAAgaactgtgtttatttcatCAGCTAACTGATACAAAGTGTTATAAATCTgtctaattatatttatataaagattttatgtCTATTTTACATCAATTTCTTTTACAACCAAAAGTTTATTAAGAGTCAGCATACATACAGAATCAAAAATAAATCCAGTTcttacaattaaaattaaattttagtgactgatgataaaaaaacagaaatttacAGATAGTTAGTATGAAATGATAAACAGCATCATTAAAACTGAGAAAGTGATCCAGGTTAAAGCAGACTGTAGGGAGCGCTaatgatttaataatgaaaataattcattcTTTAACAACTTTCAGATGCTTTATAAGCCcttcatttgtacattttttgaaAGCTGGATGTAGTATCTAAGCTCAGTTTGTCAGATTTCTACTCAAGAACTATTATAAAGCCTATAATTAAGCTATTCAACATCAGTTTCATCAAAATCCTACATAAAGCTGGTCTTACATGAAGGTAAAGGATAATTCAGATGCAGATGCACATATTAATGTCTCATTTCTCAGTAAGTACTAACTGTTAGGAATAAAGCAGATGTTTAACAGATAAAGCCACTTCAGCAAACCCTCCAGTGTTTCTCTGCTCAAAGACCTGTAGAAATTAAGATCACGTGTGTGagcataaaaatgataacattttagcATAACTGTAGCCAAACAGAGAGCATTATGGGTAAATAAACTCTCTCCAATACGGGAAATGCAAACCAACGTGTCAAATTCAAGCTTTACCTGAGTTTATGTCGGGACCAGGATCCGTCCTGTGAacagaaagcagaaataaaGCAGATGGATGAATATCAGGTAGcgagttttattattaattattaacagcatttaattttaatgagaaTGTTTAGATTTTCTGTATTCATTCTGGTTAAGTCACTGACCTGAGGCTTTCTTCTTGTAGTAGATGAATCCAGCAGCTGAAAGCACGATCCCCAACACCAGCCCCGAAGCCCCGATAGCAATCTTACTCTTATCAGGTTCAGACATGGAGGGATCCACTTATATTCCATGGGTTTTTGGAAGCTGGCGTGTTGCACCACACAGGAGATCTGCTCTCCAGATTCAGGCATGTACTCCAGATGTGAGTGGATCTGATAGTACCAATCTCCATCAGCCATCTCCTCAGTGGACGTCACGTCACCCTCGACCTTTATACCGTTCCTCATCCAGGTCACCGTGATTTGTGGAGGGTAAAATCTGTAAGCGCTGCACATCAGTCTGGCCGGGTGAGTGCCATCTGACTTCTTTACCAACTTCACTTTAACCTGGGGCTCAACTGTTTACTCAGGATGGCGCTGTAGTAAATCCCAGCATTAGGCTTACAGACAGTTTCCACTGAGGCTTTTCGTGCTTCCAGCGCTGCAGTGTCTTTGTTCCATGCCTCTGCGTTTCTGACTCCTGTCTCAGTGTATCCCACAACCTTCCCAGAGTGCTGTTAAACTCAGCGTATTTAATCTTATTGACGATGTAAGACTCTATGAGCTCCATGTCACTCAGATCAGCTTTGCTCCAGTAGCACCAACGTGACATTGCCAGTGAATCTCCATCTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166269 lncRNA upstream 60865 28515570 ~ 28516680 (+) True G140748
TU166087 lncRNA upstream 143110 28419120 ~ 28434435 (+) True G140574
TU165781 lncRNA upstream 405752 28171588 ~ 28171793 (+) True G140328
TU165771 lncRNA upstream 421634 28155708 ~ 28155911 (+) True G140318
TU165764 lncRNA upstream 440713 28136611 ~ 28136832 (+) True G140311
TU166319 lncRNA downstream 4420 28748834 ~ 28803171 (+) False slc7a4
TU166398 lncRNA downstream 414317 29158731 ~ 29166206 (+) False G140830
TU166396 lncRNA downstream 414715 29159129 ~ 29166131 (+) False G140830
TU166397 lncRNA downstream 414715 29159129 ~ 29166131 (+) True G140830
TU166461 lncRNA downstream 495068 29239482 ~ 29246316 (+) True G140884
XM_026945691.2 mRNA upstream 82512 28468419 ~ 28495033 (+) True glt1d1
XM_034306294.1 mRNA upstream 164386 28325481 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_026945841.2 mRNA downstream 43994 28788408 ~ 28803174 (+) True slc7a4
XM_034307003.1 mRNA downstream 409132 29153546 ~ 29164988 (+) True sf3a1
XM_026945780.2 mRNA downstream 423066 29167480 ~ 29178413 (+) True pold2
XM_034307006.1 mRNA downstream 423204 29167618 ~ 29178413 (+) False pold2
XM_034307008.1 mRNA downstream 562597 29307011 ~ 29313313 (+) True bag4
XR_004578633.1 other upstream 550095 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1148068 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1847714 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2010782 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2100086 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 743559 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 744135 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 744928 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 745106 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 745701 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile