RNA id: TU166297


Basic Information

Item Value
RNA id TU166297
length 426
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G140759
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28582894 ~ 28748455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAGACCCACTCCACAAAACACAGCCGGACCCACACTGGGAAGCTCCACAtccacctctacacacacacacacacacacacacatgcagggtTATTTCTGTACTAATAAAAGACTGAAGTGGTAGTTAAACACTCTGTCTCACCCCATGTCTTGGTGTCGGGTATCTGCAGGGCCTTGTGCTCCACCGTGCAGGTGTAAACGTCTCCTTCCTGTGGAGTGAAGGGCAGGTGGGAGAACTGGTTGAAGGTCTTGTCTTCATTTGGGTAGTACTGGCTGAGTGTGGATTTGTCCGTCACATCCACGTTGTTTTTGGTCCAGCGCACACGGACAGGTGGAGGGAAGAATCGTGCGGAGTGGCAGATGAGTGTGTTTGCTGAACCCAGCTGCATCTTTTGTTTGGGATAGATGGAGCTTTGTGGGGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166307 lncRNA upstream 902 28638119 ~ 28639737 (+) True G140765
TU166283 lncRNA upstream 46195 28577545 ~ 28594444 (+) False G140754
TU166269 lncRNA upstream 123959 28515570 ~ 28516680 (+) True G140748
TU166087 lncRNA upstream 206204 28419120 ~ 28434435 (+) True G140574
TU165781 lncRNA upstream 468846 28171588 ~ 28171793 (+) True G140328
TU166319 lncRNA downstream 379 28748834 ~ 28803171 (+) False slc7a4
TU166398 lncRNA downstream 410276 29158731 ~ 29166206 (+) False G140830
TU166396 lncRNA downstream 410674 29159129 ~ 29166131 (+) False G140830
TU166397 lncRNA downstream 410674 29159129 ~ 29166131 (+) True G140830
TU166461 lncRNA downstream 491027 29239482 ~ 29246316 (+) True G140884
XM_026945691.2 mRNA upstream 145606 28468419 ~ 28495033 (+) True glt1d1
XM_034306294.1 mRNA upstream 227480 28325481 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_026945841.2 mRNA downstream 39953 28788408 ~ 28803174 (+) True slc7a4
XM_034307003.1 mRNA downstream 405091 29153546 ~ 29164988 (+) True sf3a1
XM_026945780.2 mRNA downstream 419025 29167480 ~ 29178413 (+) True pold2
XM_034307006.1 mRNA downstream 419163 29167618 ~ 29178413 (+) False pold2
XM_034307008.1 mRNA downstream 558556 29307011 ~ 29313313 (+) True bag4
XR_004578633.1 other upstream 613189 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1211162 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1910808 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2073876 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2163180 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 739518 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 740094 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 740887 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 741065 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 741660 29490115 ~ 29490187 (+) True trnar-ucg_4