RNA id: TU166397


Basic Information

Item Value
RNA id TU166397
length 1220
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G140830
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29158731 ~ 29166206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctctctctctctatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctttgtatctctctatatatctctctctctgtctcgctttctctctgtatctctctctctctatttctttctctgtgtctgtctctgtctctccacccactctttcttgctgtatctctctctctctctgtctctctttctttctgtatctctctctctgtctctctctctctctctctctctatctctctctctgtatctttctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctgtgtttctcaaaTTCAGatgagctttattggcatgacagaTTGTACAATGCCAAAGCATTTATATGggcaaggaataaaacctgaacAGAGAACAAATGATAAGATTAacgaagaaaagaaaaaataaaaaagtagtctctctctctctctctctctctctctctctctctctctctcccccccccctccctctctcccccccACTCCTTGAAGCAGTtatacactctcatactaaacaaatacaataatCTGAATCCAGACGTGTGTGATGTGTTAGTGTTGTAGCAGTAAATGAGCGTTTGTGTGAATTACGCAGCTCAGAATAAATAAGCGCAGtgtagaagtttttttttttgagaatctTTTAGGCTGAATAATTTTCCTTTCACAGCTGAAACTCTGCTTTGCTGAAAGGCTGATTTGATGTTTCAATAAATTTGGTTATAATCTGATTTTTGTTGGttcttgttttgttgtttttttttaatctgatgcCTTAGCGAGGTCTTGAATCCCGTACTGAATTAAACTCTTCATATCTGAATGATGTGCTGAGAAAAGAATGAGGCTGTGAAACGGTCTGATGTTCATCAGGAAGCTGATTTCtctgtttgggggaaaaagtttCGTGTGACAAGTGAAGCTGAATaagtgaatctgattggtcagaaggtgttgattaagttgCTATAAACattcagctgcaaatcacagagttatattaatgtgctcgttttaatacgttatggtttccatagtaacggctcattcacatgatgatgatgatgataaaccgattttaaaaacaatgatgTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166319 lncRNA upstream 355958 28748834 ~ 28803171 (+) False slc7a4
TU166297 lncRNA upstream 410674 28640639 ~ 28748455 (+) False G140759
TU166461 lncRNA downstream 73351 29239482 ~ 29246316 (+) True G140884
TU166491 lncRNA downstream 130919 29297050 ~ 29297797 (+) True G140910
TU166505 lncRNA downstream 166283 29332414 ~ 29351756 (+) False LOC117597881
TU166544 lncRNA downstream 254749 29420880 ~ 29421294 (+) True G140935
TU166562 lncRNA downstream 337552 29503683 ~ 29504872 (+) True G140943
XM_026945841.2 mRNA upstream 355955 28788408 ~ 28803174 (+) True slc7a4
XM_026945691.2 mRNA upstream 664096 28468419 ~ 28495033 (+) True glt1d1
XM_034306291.1 mRNA upstream 745970 28325620 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_026945780.2 mRNA downstream 1349 29167480 ~ 29178413 (+) True pold2
XM_034307006.1 mRNA downstream 1487 29167618 ~ 29178413 (+) False pold2
XM_034307008.1 mRNA downstream 140880 29307011 ~ 29313313 (+) True bag4
XM_034307010.1 mRNA downstream 140886 29307017 ~ 29310787 (+) False bag4
XM_034307007.1 mRNA downstream 140887 29307018 ~ 29313313 (+) False bag4
XR_004578633.1 other upstream 1131679 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1729652 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 2429298 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2592366 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2681670 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 321842 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 322418 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 323211 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 323389 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 323984 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile