Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU166491 |
| length | 727 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 2 |
| gene id | G140910 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 29297050 ~ 29297797 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0046982 | protein heterodimerization activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU166461 | lncRNA | upstream | 50734 | 29239482 ~ 29246316 (+) | True | G140884 |
| TU166398 | lncRNA | upstream | 130844 | 29158731 ~ 29166206 (+) | False | G140830 |
| TU166396 | lncRNA | upstream | 130919 | 29159129 ~ 29166131 (+) | False | G140830 |
| TU166397 | lncRNA | upstream | 130919 | 29159129 ~ 29166131 (+) | True | G140830 |
| TU166319 | lncRNA | upstream | 493879 | 28748834 ~ 28803171 (+) | False | slc7a4 |
| TU166505 | lncRNA | downstream | 34617 | 29332414 ~ 29351756 (+) | False | LOC117597881 |
| TU166544 | lncRNA | downstream | 123083 | 29420880 ~ 29421294 (+) | True | G140935 |
| TU166562 | lncRNA | downstream | 205886 | 29503683 ~ 29504872 (+) | True | G140943 |
| TU166938 | lncRNA | downstream | 621935 | 29919732 ~ 29937740 (+) | True | G141242 |
| TU166944 | lncRNA | downstream | 639711 | 29937508 ~ 29954068 (+) | False | G141247 |
| XM_026945780.2 | mRNA | upstream | 118637 | 29167480 ~ 29178413 (+) | True | pold2 |
| XM_034307006.1 | mRNA | upstream | 118637 | 29167618 ~ 29178413 (+) | False | pold2 |
| XM_034307003.1 | mRNA | upstream | 132062 | 29153546 ~ 29164988 (+) | True | sf3a1 |
| XM_026945841.2 | mRNA | upstream | 493876 | 28788408 ~ 28803174 (+) | True | slc7a4 |
| XM_026945691.2 | mRNA | upstream | 802017 | 28468419 ~ 28495033 (+) | True | glt1d1 |
| XM_034307008.1 | mRNA | downstream | 9214 | 29307011 ~ 29313313 (+) | True | bag4 |
| XM_034307010.1 | mRNA | downstream | 9220 | 29307017 ~ 29310787 (+) | False | bag4 |
| XM_034307007.1 | mRNA | downstream | 9221 | 29307018 ~ 29313313 (+) | False | bag4 |
| XM_034307009.1 | mRNA | downstream | 9221 | 29307018 ~ 29313313 (+) | False | bag4 |
| XM_026945870.2 | mRNA | downstream | 18022 | 29315819 ~ 29318495 (+) | True | LOC113546128 |
| XR_004578633.1 | other | upstream | 1269600 | 28019471 ~ 28027450 (+) | False | arpc5la |
| TU165116 | other | upstream | 1867573 | 27428727 ~ 27429477 (+) | True | G139781 |
| XR_003404685.2 | other | upstream | 2567219 | 26626053 ~ 26729831 (+) | False | rimbp2 |
| TU164841 | other | upstream | 2730287 | 26563235 ~ 26566763 (+) | False | LOC117597788 |
| trnaa-agc_2 | other | upstream | 2819591 | 26477387 ~ 26477459 (+) | True | trnaa-agc_2 |
| trnag-ccc_1 | other | downstream | 190176 | 29487973 ~ 29488043 (+) | True | trnag-ccc_1 |
| trnar-ucg_2 | other | downstream | 190752 | 29488549 ~ 29488621 (+) | True | trnar-ucg_2 |
| trnar-ucg_3 | other | downstream | 191545 | 29489342 ~ 29489414 (+) | True | trnar-ucg_3 |
| trnag-ccc_2 | other | downstream | 191723 | 29489520 ~ 29489590 (+) | True | trnag-ccc_2 |
| trnar-ucg_4 | other | downstream | 192318 | 29490115 ~ 29490187 (+) | True | trnar-ucg_4 |
