RNA id: TU166544


Basic Information

Item Value
RNA id TU166544
length 357
lncRNA type intronic
GC content 0.39
exon number 2
gene id G140935
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29420880 ~ 29421294 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttattttgtgactAGTTTACTTGGTTACTTGTTTACTTGGTTACTTTTTGACTAGTTTACTTGGTTATTTTGTAACTTGCCTGTCTGTGTGGTTACTCTATGACTTTGCTACTCAGTAGCTCTGTGACTTGCTTGTCTGCTCAGTATCGTTGTGACTTCCCTGCTGAGATACTTTGCGAGTTGCTTCCAAGAACCAAAACAAACTTCGGAAAGCTTTGGGCATTCATACCATTTCAGAACAAAATCTTCTATCTGATCTTGTATGACTCATCCCTTATTGTAATAGTTTTAACTTGAATGggcagctgcacatcacacactgatggaAAAGAGCTCCACTGCACTGAAGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166505 lncRNA upstream 69124 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 123083 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 174564 29239482 ~ 29246316 (+) True G140884
TU166398 lncRNA upstream 254674 29158731 ~ 29166206 (+) False G140830
TU166562 lncRNA downstream 82389 29503683 ~ 29504872 (+) True G140943
TU166938 lncRNA downstream 498438 29919732 ~ 29937740 (+) True G141242
TU166944 lncRNA downstream 516214 29937508 ~ 29954068 (+) False G141247
TU166928 lncRNA downstream 528564 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 530471 29951765 ~ 29954068 (+) True G141247
XM_026945725.2 mRNA upstream 11816 29354983 ~ 29409064 (+) False si:dkey-220o5.5
XM_026945724.2 mRNA upstream 11816 29354984 ~ 29409064 (+) True si:dkey-220o5.5
XM_034306471.1 mRNA upstream 11816 29369268 ~ 29409064 (+) False si:dkey-220o5.5
XM_034307013.1 mRNA upstream 69118 29325934 ~ 29351762 (+) False LOC117597881
XM_034307011.1 mRNA upstream 69118 29325935 ~ 29351762 (+) True LOC117597881
XM_034306469.1 mRNA downstream 258 29421552 ~ 29472922 (+) False si:ch73-138n13.1
XM_034306468.1 mRNA downstream 259 29421553 ~ 29472922 (+) False si:ch73-138n13.1
XM_026945773.2 mRNA downstream 60722 29482016 ~ 29485959 (+) True kazald3
XM_026945772.2 mRNA downstream 69999 29491293 ~ 29500672 (+) True dok2
XM_034306928.1 mRNA downstream 202846 29624140 ~ 29696031 (+) True gfra2a
XR_004578633.1 other upstream 1393430 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1991403 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 2691049 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2854117 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2943421 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 66679 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 67255 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 68048 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 68226 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 68821 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile