RNA id: XM_026945697.2


Basic Information

Item Value
RNA id XM_026945697.2
length 1584
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC113546008
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29860188 ~ 29876280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTCACTTTCACTCCAACACCCTTGGAGGTAATTAAGCCGTATCCCGTCTCCGGCTCACTCCGCTTCTTCTCCTGAGCGTCTCACacttcactctttctctctctctctctctctctctctctttctgtctgtctgtctgtctctctgctcctgtctcatctctttttttttttttctaatcataCGCTAcgtatatatagatatatatattaactCCGTCACGTGAAGTGTGTATTTTGGACgttgtgtatgggtgtgtgtgcgtgtgtgtgtgtttcgtcaTGAGTCCTGGACTTTCACGATCCGAGGAGAAGGTGAAGGGTTCGATCGATGGCAGCGTGGATCAGAGTTTGGAGCGAGGAACTGACGGAGAAACTCCACCGCCGCTGAGAAATTACATCTTCCTGACTATTTTCACGTGTTTCTGTCCCGCGTGGCCCATCAACATCGTAGCGCTCGTGTTCTCTATGATGtctcagagCAGCTACGATAACAGGGATTATGATGGAGCTCACCGTTTGGGGAGAAAGGCTCTGCACATGGGCATCGCTTCTTTCATCATCGGCATACTCATAATTATGTCCTTCTGCATCGTACACTTCACTACGCACACCATCTGAGCACGCAGAAGAAGCTGTCCAGGAACAGTCGCAGCATGAGGTTCATCGTGACCTTTGATGGACTCGCAGGATAAAGCGGGATGTCTAGAGCCCCCTTATTGCTCAGATACGCCCCCTGCAGCactgtacagtgtttatggctaatctgtaatattttatacatttcaaagCAGTCCTAAGCTCTGGCAAGTGTAAACTCTGGTGCAGAAGCATGAGTGGGAaatcagatgtttattttatatgtgtTCATCATGTTATATAGCCTGCGTTAATTACAGTTAGCGTTAAATACACACTAGTACACGTCATCAAGTTCCTCCTACTGGCGAgctttttcttttgtctgtgtttatgcaacatgaataattaatacatttctgaaatgtatGAGATTGGAAAATCtggaaaagcaaaaacaaagaagatTGAATGAAAAAAGGCTAATTACATAAATTCGGTTTTCTTTAAAGGTGTTATTcgtattataaataaaacaaatgtacgTAGTTTCACCTTTACACCTCATACAGCCAATTAGCATTAAGCATTAtcttttaaattgattttatttattttaactccTATTTAACCATGATAGTCACATTGAGACACAAATCGCTTTTGCAAACGGATCCGTAATCCTTAAATATGGATTTTCGCTGCTGTGCTACAAAATAATTGGTTTTAAAAGGATATTACAGGTGAGGTTTGAAGTGAGTAGATGTAGACTGTGAGCGAGACAGACTTCTGTTACATGGAGTAAATTGTGAACCTTTAATTTCTCGTCTTATTGTTCCTTTAAATCACACAGTTTGTTATTGatcatgtttattatttcacactttttgtttaaaaaaacactgacagcaAATTTATGTTTGTACAGAAATTATTTGTCTGTgtgactgtgattttttttaaagaatatgtGCAacttatgtatttaaataaataaataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166562 lncRNA upstream 355316 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 438894 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 508432 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 562391 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 613872 29239482 ~ 29246316 (+) True G140884
TU166938 lncRNA downstream 43452 29919732 ~ 29937740 (+) True G141242
TU166944 lncRNA downstream 61228 29937508 ~ 29954068 (+) False G141247
TU166928 lncRNA downstream 73578 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 75485 29951765 ~ 29954068 (+) True G141247
TU166930 lncRNA downstream 88487 29964767 ~ 30022919 (+) True G141236
XM_034306270.1 mRNA upstream 15718 29820503 ~ 29844470 (+) True msi1b
XM_026945916.2 mRNA upstream 60244 29788461 ~ 29799944 (+) True lzts1
XM_026945917.2 mRNA upstream 60244 29788461 ~ 29799944 (+) False lzts1
XM_034306928.1 mRNA upstream 164157 29624140 ~ 29696031 (+) True gfra2a
XM_026945772.2 mRNA upstream 359516 29491293 ~ 29500672 (+) True dok2
XM_034306781.1 mRNA downstream 2079 29878359 ~ 29887355 (+) False prkab1b
XM_034306783.1 mRNA downstream 2096 29878376 ~ 29887355 (+) True prkab1b
XM_034306784.1 mRNA downstream 2217 29878497 ~ 29887355 (+) False prkab1b
XM_026945800.2 mRNA downstream 23177 29899457 ~ 29903243 (+) True LOC113546087
XM_034306906.1 mRNA downstream 27233 29903513 ~ 29929070 (+) True LOC113546064
trnar-ucg_4 other upstream 370001 29490115 ~ 29490187 (+) True trnar-ucg_4
trnag-ccc_2 other upstream 370598 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_3 other upstream 370774 29489342 ~ 29489414 (+) True trnar-ucg_3
trnar-ucg_2 other upstream 371567 29488549 ~ 29488621 (+) True trnar-ucg_2
trnag-ccc_1 other upstream 372145 29487973 ~ 29488043 (+) True trnag-ccc_1
TU166919 other downstream 27248 29903528 ~ 29924206 (+) False LOC113546064
TU166932 other downstream 32135 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other downstream 32135 29908415 ~ 29926735 (+) False LOC113546064
TU166924 other downstream 33749 29910029 ~ 29929154 (+) True G141234
TU166920 other downstream 49297 29925577 ~ 29926469 (+) False LOC113546064

Expression Profile