RNA id: XM_034306906.1


Basic Information

Item Value
RNA id XM_034306906.1
length 2795
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC113546064
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29903513 ~ 29929070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcctcctcttttctctcacaTGACACTTACTTGTGACCAACATTCCAGACTTTTAGAAAGATTTTCCTctaaagtgagaaagagagagaaagaacgaaGGAAATGTCAcattaaggggaaaaaagctttgtttttatgttaaaatcGGGATTTTTTAACGCTGAAGTGACAGAAACACTGACCTGAGTTCGGATTAACAGggatggagggaggacGGAGGATGGAGCGTCTCTGATAAAGGATAAAGGTTTAATCTGCACCGTGTTTCTGAATCACTCAGTAACAAGCAACATGGCTGAGACACGACACACCGACAGCTCACGctgCAGCTGTTTCTTCCTGTACGATCGCTCTAAAGTTCAGGAGGAAGGCGATCTGACCCGCGCCGGAATCTGCTACTACTATCCTGAacacactcCGTTGGATCTGCAGGAGCTGGTCTGTGGTCAGCTGGCTGGTGTGAGTCGCTGTGTGTCAGAGATTTCAGCGTCTCCCGTCCGGCTGCTCCGTCTGCGCAGGAGCAAATACGCCATCCGCATGAGAGACGACTTCCtctgggctctgAGCTGTGTAAATGATCTCCCggatgtcaggtgtgattttctgGATCAGATGATTGATCTGTTCTGTTTCTATAACGGTTCGGTGCGTCGCAGCTATCAGCTCCACACTCAGGAGGAACTGGCTGTACGCTGGGCTCGCTATCTCTCCCACCTGCAGGGCGGCGCTACCGAGCTCCACCACGTCTTCACCTGCCTCAGGACCATCGACTACACACACattgACCCGTTGTTGTTGATGAAGGCTGCTCTGATCCTGCAGGCGTGTCAGCGCTGCCCTGagtgtgtgtgtgtgtgtgtgtgtgcgtgcagaaTGGTGACCACACAGATGTCTCCAGAGCTGACGATGAAGGTGATGGTGCATGAAACAGAGACGTACAGCCTACAGGAACAGAAGAAGCCATCCAGTGGGAGGAGCTCATTTCTGGCCACGCCCCATTCCAGCACAACGACGATGCCGGTGTTTCTGACGCCTTCTGAGCTGCACACGCTACGCCGCCCTCTAGTGGACAACTCCGCGTCCTGCAGATCTGAATCTCCTGAGCGACCAGTGAAACCCCGCCTCCTTTCTCGCACTCTCTCTGACACTCCGATCAACGACCCATCGTCCAGTCAGATGCTCACGTCCTCCCCTGACTCCTCCCTCTCTGATGATGCGAGCTTCAGCTTGTGTCCCTCGTTAGCGAGTACGTCGTTTCGCTCCAGCGTGGCGAGCCAGCCAGGAGAAGGAGACGACGCTGCCGAGTCACATGACCACGCCATGGCCAATGAGGTGCTTCCGTTTGAGGGCTCGGCACCAGGTAAAGGTGAGGACGGCGAGCGGGAGCAGGTCGATGATGTCAGCGCCGGGTATCAGAACCACAGCAGCAGTGAGGATGAGAATCTCCGAGACGatgaagagaaggaggaggaaggggCGGGGCAAGAGAGTGATGtcagagagaggaggagtgacggagaggaggagtgtgtgaggggtgtgaggGCGTGGACGTGGTTCTCCGAGCCCATGCTGCTGTATGAGCACCGGGTCAGAGGGGCTCGACTCATGCTGCTGGTGGAACCCAGCTTCGACACACACCCTaacgccaaacaggaagtgtACCACAGCAGTCTGGCGTCTCTGAACGGACTCGAAGCTCACCTGAGGACGATCCCACCTCCGTCCGAGATCCCCGCAGCGCCGTACACTTTCGCCCACTACGACCGCATCCAGAACACACTCACcagtgactTAACATGTCTGGCCGTTCTACCGGACTTCAGGATCGCTCTGTTTGTGAAAGCTACAGCTCTTCTGCACTCCCACTTCTCACACGAGGACATGCTGCAGGAAGCCattatcagaagCGCCAGCTGTGCTCTCTATGCCACTCGCACTCCGGCTCAGGAGACCTTCTTCGTCCAGCAGGGGGCCCCCGCAAGGAATTCTGGGATACCGAACGGCCAGGACAGCGCCTTCTCTCTGCCGAGTAAAGCTCGCCATCGCTTACTCAAACATGGAGTCAACCTGCTCTGagctacagacacacactctctctcacacacacacacacacacacacacacacacagatgcctgtgattATTAATGACCTTTACACTGAGGTTCAGTGTATTAGCTGTGTAGTAACTAATAAACTagcactagtgtgtgtgtgtgcactactTAGGGCATGAAGTAAAGTCCCCTACGCACTACGTAGTGTCTAAATTCACTCCCTACTGTATACTGAGTGCGACGATATTAGCTAAATACCTCAACGACTAGCTAACATTCCCACATTCTTATGATTATTTGAtatacttttttgtatttttcttattttgtgtcgtgtgtgtgtgtgtgtgtgtatttcctaCTAAAACATATAcactttctggaaaaaaaaaagggtactaagCCGTACCTTTCGTTGTCACTGGAGTGGTACCCTCAAACATACACCTTTAGTacctttgtacctttagtacctTTTCCCTACAACTGTGCGTgtagtttaaatatttaaaggtcCACATTTATAGGCACTAAATGTACTAAAAATAAGGGAAATAAGGATTAAGGCAaaaagaaaagtacagtttgcTACCCTTATTTTCCTGAGAGTGTAAAAGCATATTGATGTTTTAAAgcttatttgtaataaataataaataaaggtaataTTTGTAGTACAAAATGTAGTGTTATTGTTGCATTCGTGTTGTTAATAAAGTGCTGGAGCTATTca

Function

GO: NA

KEGG:

id description
K20194 HPS4; Hermansky-Pudlak syndrome 4 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166562 lncRNA upstream 398641 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 482219 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 551757 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 605716 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 657197 29239482 ~ 29246316 (+) True G140884
TU166944 lncRNA downstream 8438 29937508 ~ 29954068 (+) False G141247
TU166928 lncRNA downstream 20788 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 22695 29951765 ~ 29954068 (+) True G141247
TU166930 lncRNA downstream 35697 29964767 ~ 30022919 (+) True G141236
TU166931 lncRNA downstream 42333 29971403 ~ 30022919 (+) False G141236
XM_026945800.2 mRNA upstream 270 29899457 ~ 29903243 (+) True LOC113546087
XM_034306781.1 mRNA upstream 16158 29878359 ~ 29887355 (+) False prkab1b
XM_034306783.1 mRNA upstream 16158 29878376 ~ 29887355 (+) True prkab1b
XM_034306784.1 mRNA upstream 16158 29878497 ~ 29887355 (+) False prkab1b
XM_026945697.2 mRNA upstream 27233 29860188 ~ 29876280 (+) True LOC113546008
XM_034306907.1 mRNA downstream 1179 29930249 ~ 29932961 (+) True LOC113546086
XM_034306693.1 mRNA downstream 3896 29932966 ~ 29946606 (+) True hnf1a
XM_034306392.1 mRNA downstream 99791 30028861 ~ 30040856 (+) True ggt5a
XM_026945859.2 mRNA downstream 181727 30110797 ~ 30131740 (+) True lrrc75ba
XM_034306882.1 mRNA downstream 204866 30133936 ~ 30160538 (+) False LOC113546114
TU166912 other upstream 27247 29860261 ~ 29876266 (+) False LOC113546008
trnar-ucg_4 other upstream 413326 29490115 ~ 29490187 (+) True trnar-ucg_4
trnag-ccc_2 other upstream 413923 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_3 other upstream 414099 29489342 ~ 29489414 (+) True trnar-ucg_3
trnar-ucg_2 other upstream 414892 29488549 ~ 29488621 (+) True trnar-ucg_2

Expression Profile