RNA id: TU166938


Basic Information

Item Value
RNA id TU166938
length 323
lncRNA type read_through
GC content 0.45
exon number 2
gene id G141242
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29919732 ~ 29937740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actatccTATTGATAAGTCACTGTATCAGATGTAGCGATGCTATACATCCATAttgcactgagacacacacacacactcgttgaTGAgctacaaacacactcacacacacacacacacacacacacactaaatttGCCTAAATTCCTATTTCACTATGTCTTCTTACCTGCTCTGTCCTTTGTCCTGCTCATGTCTCCCTCTGTTctccatcagtgtgtgtgtgtgagagagagtgtgtgtgagagagagtgagtgagtgtgtgtgtgagagtgtgtgagagagagtgagtgaatgtgtgtgtgagagagtgtgtgtctcgGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166562 lncRNA upstream 414860 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 498438 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 567976 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 621935 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 673416 29239482 ~ 29246316 (+) True G140884
TU166928 lncRNA downstream 12118 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 14025 29951765 ~ 29954068 (+) True G141247
TU166930 lncRNA downstream 27027 29964767 ~ 30022919 (+) True G141236
TU166931 lncRNA downstream 33663 29971403 ~ 30022919 (+) False G141236
TU167045 lncRNA downstream 91163 30028903 ~ 30033768 (+) False ggt5a
XM_034306694.1 mRNA upstream 8780 29909977 ~ 29910952 (+) True LOC117597833
XM_026945800.2 mRNA upstream 16489 29899457 ~ 29903243 (+) True LOC113546087
XM_034306781.1 mRNA upstream 32377 29878359 ~ 29887355 (+) False prkab1b
XM_034306783.1 mRNA upstream 32377 29878376 ~ 29887355 (+) True prkab1b
XM_034306784.1 mRNA upstream 32377 29878497 ~ 29887355 (+) False prkab1b
XM_034306392.1 mRNA downstream 91121 30028861 ~ 30040856 (+) True ggt5a
XM_026945859.2 mRNA downstream 173057 30110797 ~ 30131740 (+) True lrrc75ba
XM_034306882.1 mRNA downstream 196196 30133936 ~ 30160538 (+) False LOC113546114
XM_034306884.1 mRNA downstream 196196 30133936 ~ 30160538 (+) False LOC113546114
XM_034306889.1 mRNA downstream 196196 30133936 ~ 30160538 (+) False LOC113546114
TU166912 other upstream 43466 29860261 ~ 29876266 (+) False LOC113546008
trnar-ucg_4 other upstream 429545 29490115 ~ 29490187 (+) True trnar-ucg_4
trnag-ccc_2 other upstream 430142 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_3 other upstream 430318 29489342 ~ 29489414 (+) True trnar-ucg_3
trnar-ucg_2 other upstream 431111 29488549 ~ 29488621 (+) True trnar-ucg_2

Expression Profile