RNA id: TU166943


Basic Information

Item Value
RNA id TU166943
length 2248
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G141247
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29937508 ~ 29954068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACAAACAAACTTCTACATTTGTCTCGTCTATAATACAATCTTTTCAAAACTAtaatcagaagaaaaaaacgTTTCATTTCAGTCTCACAGAATTTCAGaaacagtttagtgtttttgtttttttttttcagatccaGCTCACAATCTGATCTACTGTAAGGCATCAAACGGTCCGTAATCTCACGTCTAATCATCAACACGTGACCCTGAAAACGTCTCACACACCAGTCAGCAATAATCCCAGcgattttacttttaataaacaTGTCTGGAGTGTAGATTTCTGTTGGTTCATTATCTCTGCTGGGATTTTGGGGAGTTTTGTGatattttcagttcagtcctgATACAggcttcatcatcatcatcatcatcatcaatgcaaaataaaataaaataaaataaaaataagaaagtaTATAAAGCATGTTTCCAGTTGAACACATTGTACAGAAATCAGTAACAGAAACATAACCAGCTTTTCTACTGGACGAAACATGACTCGGCTTCTCATCGGGCGTCATGGCAACCAAACATCGGCGGGGTTTCTTTACAGAcgacaaaaatacaaataaaacactttaaagtgGCTCCGTTTACGCCTCGTTCAGTAACGTGAGGATTAAAAACATTCAACACAACGTCAGGAAAAAAGGATTTAACAGCTCGCACGTGTGAAATCACGTGATTTACGATGACAAAGTTTATTTagagctttattttttatataatatatgaatttataatCATCTGTATAATCTCATTCAGACGCTGGAACttttactaaacacacactgatcatcaGGTAcacaatatatcacaatatccaattattattattattgttattattgttattattgttattatggaCTGCACATATGGAAGGGAAATATAtttcagaatatatttttagaacGTATGTAAATATTCAGAACTTTCCCtttaaagtaaaagaaagaaaaggaaagattATTTTTGGTCCCATATTGTGAAATTCACTGTAACACATCACCGCTACAGGAGAGGAGCAAAGGAACCAAAACACGATTTAATTAACTTAGGAACTGAATTATTCGTAATGCTTtcgaataaaaaatattttcgtGGCCTGTTCAGAGCTCTGAGAAATTATAACGAAGTTTTAAGGACACTTTAATGAGATAACAATGAGATGTTTcccataaaacaaaacaaacaaacaaacaaaaagagcgAAATTAAAAATATCGCTCTTTATGGAAAACAAACTACATATCGAGAGCCAATCGTAACGCAGTGGGCGGGGCCAACACCTGATCTGAGATTCGTAAAGCTATGATTTTGGATCTGAAAATTATCAAGAGACTGATTCTAACAATTAATCATAATCAGTTTGCTATTTTTATATCGTGATTAGTGTCGATATTTAATTTTTCCATGACGATAATCCTGCGACGTTTATCTCTGTTTACAAAACCGTCTCGTGATTCGATTTGTTAAAccgtctgtgtgtttatctgttcaGTATTTTTAACCGTAAATGAAGCTCGTGTccacaataataacaatattccGACTGTACGATACTGTGATAAATCGTCTGTGATGATCATCAGCGAGTTCctggcgaaaaaaaaaaattaaatttaaaaagagcGATTTGTGCGATATTACGAACGGAATAaagtttttctgtgtgtttcagcgAATCTCCTGCGTTAGACACAAACGAAACACTGCTGAGCGACggatacaggtgtgtgtgacgGTGAGGACACtcagacacatcagacacacatGGAGCtctcgcacgcacacacacacacacacacacacacacacacagtcattcagACAGTAACACGCTCCTTACACACAGTGTTAATGACATTCTGACTGATGACTGATTTCAGGATTTCAATCACacctctgatttttttaaaaaaaaactttttctccTCATCACCGTGCAAGAAAACCAGATGAATGCAGAGCAGtttcaataaacacacacacacacacacacacacacacaacacttcaTACATTCTTCATTCAGTATCGAAGAGAAGGGGTGCCATTATTTATGACTCTCTTAAAATGTGTCGCAAGAgcactgcatttttatttcttcatttataaTTCAGTTCATCTTAAAGAACAttattcaattaattaattcatttctaGTCTGAACACAAGGTGGCGCCgcttttcactttatttctgAAGCAGCTTTTAAGAGCGAAAtaatagcttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166938 lncRNA upstream 14025 29919732 ~ 29937740 (+) True G141242
TU166562 lncRNA upstream 446893 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 530471 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 600009 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 653968 29297050 ~ 29297797 (+) True G140910
TU166930 lncRNA downstream 10699 29964767 ~ 30022919 (+) True G141236
TU166931 lncRNA downstream 17335 29971403 ~ 30022919 (+) False G141236
TU167045 lncRNA downstream 74835 30028903 ~ 30033768 (+) False ggt5a
TU167047 lncRNA downstream 88774 30042842 ~ 30043393 (+) True G141324
TU167053 lncRNA downstream 89858 30043926 ~ 30075520 (+) False G141328
XM_034306693.1 mRNA upstream 5159 29932966 ~ 29946606 (+) True hnf1a
XM_034306907.1 mRNA upstream 18804 29930249 ~ 29932961 (+) True LOC113546086
XM_034306906.1 mRNA upstream 22695 29903513 ~ 29929070 (+) True LOC113546064
XM_034306694.1 mRNA upstream 40813 29909977 ~ 29910952 (+) True LOC117597833
XM_026945800.2 mRNA upstream 48522 29899457 ~ 29903243 (+) True LOC113546087
XM_034306392.1 mRNA downstream 74793 30028861 ~ 30040856 (+) True ggt5a
XM_026945859.2 mRNA downstream 156729 30110797 ~ 30131740 (+) True lrrc75ba
XM_034306882.1 mRNA downstream 179868 30133936 ~ 30160538 (+) False LOC113546114
XM_034306884.1 mRNA downstream 179868 30133936 ~ 30160538 (+) False LOC113546114
XM_034306889.1 mRNA downstream 179868 30133936 ~ 30160538 (+) False LOC113546114
TU166924 other upstream 22611 29910029 ~ 29929154 (+) True G141234
TU166932 other upstream 25030 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other upstream 25030 29908415 ~ 29926735 (+) False LOC113546064
TU166920 other upstream 25296 29925577 ~ 29926469 (+) False LOC113546064
TU166919 other upstream 27559 29903528 ~ 29924206 (+) False LOC113546064

Expression Profile