RNA id: TU167047


Basic Information

Item Value
RNA id TU167047
length 552
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G141324
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 30042842 ~ 30043393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCCCTCGCTCTGACGTTCTCTCACCCTGACGTTCTCTCACCCTGACATtccctctgtgtctgtgtgaaattTCTGTGTTTATCTTAGAACTATGTTAAGGAGTGTTTATTTTGAACATGTGACCTTTGTTGACCCCATGACCCCAACCATGACCGGAGTAACCCTTTCATAACTTCCCTTAATAATACACAGGGttgtttcctgttttatttaaaatccacagtgtgtgtgttactgcacAGGAAGTGTGTACAAAACCATCAGATTGGCATTCTCTAAAAATTGCGTATTTCCAGCAGTGATCATTATAGAGAAATAAAGGGACCAAAGGGCCGTGTCCCAAACATTAGCACAGAACAGAAGCGTTCTTACTAGAATTAATTCTAACGAGTGAACATGGATTTATGTTAAACCTGATGTACACTTTcatgcagtgcattatgggtaatactcACTCTGACATCAGGAGGTCTCATTAGAACAGAGCCTGTGTTTTAGAGTTCAGTACAGATCTTTAAAATGGCTGATGTTCAAATAAGAACATTAGGAA

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167045 lncRNA upstream 9074 30028903 ~ 30033768 (+) False ggt5a
TU166930 lncRNA upstream 19923 29964767 ~ 30022919 (+) True G141236
TU166931 lncRNA upstream 19923 29971403 ~ 30022919 (+) False G141236
TU166928 lncRNA upstream 74801 29949858 ~ 29968041 (+) True G141235
TU166944 lncRNA upstream 88774 29937508 ~ 29954068 (+) False G141247
TU167053 lncRNA downstream 533 30043926 ~ 30075520 (+) False G141328
TU167055 lncRNA downstream 6575 30049968 ~ 30098842 (+) True G141328
TU167080 lncRNA downstream 121000 30164393 ~ 30164991 (+) True G141348
TU167105 lncRNA downstream 128260 30171653 ~ 30172003 (+) True G141366
TU167107 lncRNA downstream 146074 30189467 ~ 30202765 (+) True G141367
XM_034306392.1 mRNA upstream 1986 30028861 ~ 30040856 (+) True ggt5a
XM_034306693.1 mRNA upstream 96236 29932966 ~ 29946606 (+) True hnf1a
XM_034306907.1 mRNA upstream 109881 29930249 ~ 29932961 (+) True LOC113546086
XM_034306906.1 mRNA upstream 113772 29903513 ~ 29929070 (+) True LOC113546064
XM_034306694.1 mRNA upstream 131890 29909977 ~ 29910952 (+) True LOC117597833
XM_026945859.2 mRNA downstream 67404 30110797 ~ 30131740 (+) True lrrc75ba
XM_034306882.1 mRNA downstream 90543 30133936 ~ 30160538 (+) False LOC113546114
XM_034306884.1 mRNA downstream 90543 30133936 ~ 30160538 (+) False LOC113546114
XM_034306889.1 mRNA downstream 90543 30133936 ~ 30160538 (+) False LOC113546114
XM_034306890.1 mRNA downstream 90543 30133936 ~ 30160538 (+) False LOC113546114
TU166924 other upstream 113688 29910029 ~ 29929154 (+) True G141234
TU166932 other upstream 116107 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other upstream 116107 29908415 ~ 29926735 (+) False LOC113546064
TU166920 other upstream 116373 29925577 ~ 29926469 (+) False LOC113546064
TU166919 other upstream 118636 29903528 ~ 29924206 (+) False LOC113546064

Expression Profile