RNA id: XM_026909634.2


Basic Information

Item Value
RNA id XM_026909634.2
length 2282
RNA type mRNA
GC content 0.47
exon number 2
gene id adora1b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12775926 ~ 12783157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacctcattttagCGCCTGAAGAAGCTTGGACCGGAAACGCTCGGGGCGCTGTAAAACACGCTGTGAAGGAAACAAGCAATATTTGCTGAAAACGGTATTTAAAAGTGTGCTGCTGGATAGCCAGGGCTCTCATCTGAGACGGCcctgaattaatttttttttgttcttcttcttcttcttttcttcattcCTCTCCTGTCCCGGCTCAGCACACGCCTCTCTGCGGGCTTTGCCTCGAGAGCGTTTGTGACTTTGCACAGCGAGAAAGGGGCGTCGCGTGCGTTCATGCGGTTTAATTCTAAGAAATAACGGcaataaaatcacacaaaagaAACACAGGCTGATCGGGACGCTGCGTACGCGGAGGCTTCTGAGGACTCGCAGTCACATTCAGAGAAGCGCCAGGACAACAGTGCTTACATGGACGGATTGCGTTTCGGCTTTCCAGAGCAGGAATGAAGCTCTCTCTCATCCCATTTTTGATGTCTTGGATGGTGGGAGGACTGTACAACGAATGCAGGTGACAAATGAACGCAGAACCTAACTGTTTTCCCCGGACAAAGACATGCAAGCAGCAGGACATGTGCACAAAGCGCAGGTGGATCTGATGAACAGATGCGTTTGGGTTATGCGAATATGGTTCCACGATcggacatttttattttacgaAAACGAATAAAAGCACACATTCTGTGATGCATTTCATTCTATATTATTTCTGCATGTATTGCTGTGTTTATAAAAAGCATGCTTGGTGTGCCAGAATAGCCCCAAGTACTCCAAGCATTCTGATAGGAGGAATTTTATGGACTGCAGCCAGACAATTGAACATCACTTCCTTCTGAAAGCCGATATCCCCGCcaaactttaatttattatactGGCCTTTTATTCCTTGCACTCCACACGACCATGCCAGACGACCACTACGCAGCTCAAGCCCTCTACATAGGCATGGAGGTGCTGATCGCCGTGTCCTCGGTGATCGGAAACGTGATGGTGATTTGGGCGGTTAAAATAAACCGGTCACTGAGAGACACAACTTTCTGGTTCATTGTATCTCTGGCTGTGGCCGACATCGCGGTGGGAGCTCTCGTCATCCCGCTCGCCATCACCATCAGTATCGGACTCCAGACTCACTTCTACAGCTGTTTGCTGGTGGCGTGCACAGTGCTGGTGCTCACTCAGAGCTCCATCCTCGCCCTGCTCGCCATCGCCATTGACCGATACCTCAGAGTAAAGATCCCGACCAGTTACAAACGAGTGGTCACTCCAAGACGAGTGGGATTAGCGGTGGTCGCATGCTGGGCAGTAGCCTTCATAGTTGGCATGACTCCTATGCTCGGCTGGAACAAGTTACACAACCTCGAGCAACAAAATGGCTCACTCAGCAGTGACCTGATCATCACCTGCCAGTTTGAGAACGTCATCAGTATGGAATACATGGTTTACTTCAATTTTTTCGGCTGGGTGCTGCCACCGCTGCTCCTTATGCTTGGCATCTACACGGAGATCTTCTACATGATTCACAAGCAGTTGAACAAGAAGGTGAGCACAAGCCACACTGACCCAAACAAGTACTACGATAAAGAATTGAAGCTGGCAAAGTCACTCGCCCTTGTCCTGTTCCTGTTTGCTGTCAGTTGGCTCCCGCTTCATATTCTGAACTGCATCACACTCTTCTGCCCTAAGTGTGAGAAACCCATATTGCTCCTCTATATCGCCATCTTACTTACTCATGGCAACTCAGCAGTGAACCCTATTGTCTATGCTTTCCGCATTAAAAAGTTTCGCACCGCGTTCCAAAGGATCTGGAAGCAGTATTTCTGCTGTAAGGAGGCTTCTCCCATTGAAATGCAAATGAGTGAACGACTGGATAAGGATAATTACAGCCACGCTCCTCAGACTGCGTTTCACGTGGATCACAATAACATTTAACTGGAAGACCATGGACCTACTGAGCAGGCTGGCATTCTGCCacatatgaatataatatgaatgtaaatcatatgctgaCTGCAGCTGTCAGAATGTGCCCCCATTCTGCAAATCAGTCAGTTAAACATTATTGTTCCACTGGCATGGACAAAGGGAAGGGAAATTTAGATCATGAAGAAGGGGAGTACGATGTGTTGTACACGaaatcaaaaatgttttatacttgtaaaaatgtttactgGGTGATAAAATGTATGTAGAGTCAAACCACAGGGGAAGTATcagacaagttaaaaaaaaaaatccacactggtttatttgcactattgtgcTATCCAAAA

Function

GO:

id name namespace
GO:0001973 G protein-coupled adenosine receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001609 G protein-coupled adenosine receptor activity molecular_function

KEGG:

id description
K04265 ADORA1; adenosine receptor A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155457 lncRNA upstream 46404 12712625 ~ 12729522 (+) True G131605
TU155458 lncRNA upstream 63441 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA upstream 74425 12700712 ~ 12701501 (+) True LOC117597872
TU155155 lncRNA upstream 171292 12603517 ~ 12604634 (+) False rbm15
XR_004578623.1 lncRNA upstream 242668 12519894 ~ 12533258 (+) True LOC117597859
XR_004578530.1 lncRNA downstream 25966 12809123 ~ 12809738 (+) True LOC117597782
TU155563 lncRNA downstream 154147 12937304 ~ 12940631 (+) True LOC117597771
XR_004578521.1 lncRNA downstream 155506 12938663 ~ 12941456 (+) False LOC117597771
TU155603 lncRNA downstream 220238 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA downstream 220238 13003395 ~ 13006090 (+) True G131721
XM_026922582.2 mRNA upstream 113781 12659028 ~ 12662145 (+) True LOC113531715
XM_026921593.1 mRNA upstream 121243 12651225 ~ 12654683 (+) True LOC113531099
XM_026927728.2 mRNA upstream 126819 12646689 ~ 12649107 (+) True prok1
XM_034306621.1 mRNA upstream 171221 12599698 ~ 12604705 (+) True rbm15
XM_026926809.2 mRNA upstream 178487 12586799 ~ 12597439 (+) True alx3
XM_034307046.1 mRNA downstream 9059 12792216 ~ 12798367 (+) False dclre1b
XM_026911429.2 mRNA downstream 9293 12792450 ~ 12798367 (+) True dclre1b
XM_034307047.1 mRNA downstream 9293 12792450 ~ 12798367 (+) False dclre1b
XM_026928189.2 mRNA downstream 133281 12916438 ~ 12921186 (+) True lhfpl5b
XM_026947120.2 mRNA downstream 194870 12978027 ~ 12979366 (+) True c8h1orf194
trnad-guc_1 other upstream 393856 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1065381 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1066494 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 278779 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 280893 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 586391 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 922099 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1539015 14322172 ~ 14323450 (+) True G132595

Expression Profile