RNA id: XM_026910720.2


Basic Information

Item Value
RNA id XM_026910720.2
length 2283
RNA type mRNA
GC content 0.45
exon number 18
gene id cdc45
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16305827 ~ 16315310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagctccgcccacttgtTCACAAACGAATTTGGCGCCAGAGTTTCAACTCTGCGCTAAACAAGAGAGTTTTTAAACTGAAGCTATTATTGCGGGGAAGTGTTGAATTGTGTGTTGAAGATTTTATGTCGGTTATTTAAGATGTTTGTAACAGATATTCGAAAAGAATTTTATGATGTTGTGGTTAATCAGAGAGTGGCTCTGCTCGTGTCCTCGGACATCGACGCGCTGTGTGCGTGTAAAATCCTACAGGCTTTGTTCCATTGCGATCAGGTGCAGTACACACTGGTTCCTGTGACAGGATGGCAGGATCTCGCTACAGCTTTTCTGGAACATAAGGAACAGTACAGATATTTTGTCCTGATGAATTGTGGGGCAAATGTGGACCTGTTGGAGACTCTCCAGCCTGAAGAAGACTCAGTGTTCTTCATCTGTGATACCCACAGGCCTGTAGATGTGGTGAACGTTTACAACGACACACAGATCAAACTGCTAATTAAGCAAGACGATGACCTTGGTGTGCCCTCCTATGATGATATTTTCcgtgatgatgaggatgaagacAGCGATGGAGGGGATTCTGGGAATGAGAGTGATGGTGGCTCAGAGCCATCTGGGAAGCGACGGCGTTTCGATGAGGGGGCACTGGAGAGGAGAATCGAGCGTCAGAGAGCGAGGAGAGAGTGGGAGGCTCGAAGGAGGGATATCCTGTTTGATTATGAACAGTATGAGTACCATGGCACTTCAGCTGCAATGGTTATGTTTGAGCTGGCCTGGGTTATGACCAAAGACACCAGGGACATGTTGTGGTGGAGCATCATTGGTCTGACTGATCAGTGGGTTCATGAAAAAATCACACATATCAAGTATGTAACGGACATCGCTACTCTGCAAAGGCACGTGTCTCGCCATAACCATCGCAATGAGGATGAAGAGAACTCTGTCTCTATCGACTGCATGAGGATCACTTTTGAATACGACTTGAGATTGGCTTTGTACCAACACTGGTCACTGTATGAGAGCATCTGCAACTCCTGCTACACCTCCTGCTGTTTTAAACTCTGGTCTATCAATGGGCAAAAGAAACTGCAGGAATTCCTGGCAGACATGGGCCTCCCACTCAAACAGGTGCGACAGAAGTTTAACTCCATGGACATATCAATCAAAGAGAACCTGCGTGAGGTCATCGAGGAATCCTCCAACAAATTTGGTATGAAGGACATCCGCGTACAGACGTTTGGCGTGCACTTTGGCTTTAAGAATCGCTTCTTGGCGAGTGATGTGGTGCATGCTGCTGCTGCCCTGCTGGAGAATGTGGAGAAGGATGAGACTGCCACAGACAACTTCATCAAAGCTCTGGATTGCCTCTCAAGgagtaaCATAGAAAGGCTGCATTTGGGAATTGATCTTGCTAAGAAAAAGCTGAAGGCTATTCAGCAGACAGTCGCCAGCTGCATCTGCACTAATCTCATTCTCTCACAAGGACCctttctttactgccatctactggagGGAACACCAGATGTAAAGCTCTTTTCCAAGCCTTTGGCCCTGACTCTGCTCTGTAAATACCTGCTCAAGGCCTTTGTCTGCTCAacTCGGAATAAGCGCTGCAAGCTGTTGCCGCTCATTATGGCTGCTCCTATGGATGTGGAGAAGGGCACTGTCATAGTGTTAGGCATTCCACCAGAGTCTGAGACCTCTAACAAGAAAAATTTCTTTGGCAGGGCCTTTGAGAAAGCTGCTGAAAGTACAAGCTCCAGGACACTGCACGATCACTTTGACACTTCAATTATTGAGCTGAAGATGGAAGACAAAGGAAAATTTCTTGATGCCCTCATTACCCTGCTGTCCTAACGCCTCACTGCATGCCTCAAGCCtccctcaaacatcacacaccaaaAGAACATTGAGAACTAGGCTATACTTGATATGTCACCTGACTTGGTCTCTTGCAGGAAGAATTCTGTATGTGAATGGAATTTTACATTGGTTGAGAGCAAATATGAGATTTAACATGTTTCCTGTCAGTTTGGTGCCagatttgtgagtgtgtgtgcatgtggagcTGGGCTCCTGAAGACGTTGACCAGTAGTGGGCACACATTTACTACAGGTGTTTTTGTCATCTGATACAAGTCATGCACTTCTGACATTTTGTAtgtgtattatactgtacattcatttgattttgttgtagttttaatgttttggtgtttgtttttacatgtgAAACTCAATATAAGAATCATGTACTCAATAATAAATGGTGTATTATTAACTTA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0006270 DNA replication initiation biological_process

KEGG:

id description
K06628 CDC45; cell division control protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157981 lncRNA upstream 133294 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 134327 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 135230 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 262788 16042840 ~ 16043039 (+) True G133635
TU157869 lncRNA upstream 287044 16011774 ~ 16018783 (+) False G133631
TU158107 lncRNA downstream 15270 16330580 ~ 16362249 (+) True G133842
TU158165 lncRNA downstream 123956 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 265143 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 328180 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 328180 16643490 ~ 16663314 (+) False LOC117597830
XM_026910764.2 mRNA upstream 4156 16294460 ~ 16301671 (+) True ciao1
XM_026910773.2 mRNA upstream 35740 16232101 ~ 16270087 (+) True igsf9b
XM_026910734.2 mRNA downstream 13432 16328742 ~ 16353557 (+) True zgc:63587
XM_026910755.2 mRNA downstream 40386 16355696 ~ 16371741 (+) False sept5a
XM_026910754.2 mRNA downstream 47860 16363170 ~ 16371741 (+) True sept5a
XM_026910756.2 mRNA downstream 56647 16371957 ~ 16375128 (+) True gp1bb
XM_026910767.2 mRNA downstream 60835 16376145 ~ 16397625 (+) True dhx37
TU157866 other upstream 287044 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 294223 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1325923 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1982377 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2598277 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 87438 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 264947 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 265143 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 265143 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 265143 16580453 ~ 16600585 (+) False mtmr3

Expression Profile