RNA id: XM_034307047.1


Basic Information

Item Value
RNA id XM_034307047.1
length 2939
RNA type mRNA
GC content 0.44
exon number 5
gene id dclre1b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12792216 ~ 12798367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTGCATCAGCCAAcgggaaatgttttttttttttcaaatcagttACATGCATAGCGAGGTGATGTATTTAGTGCTGCATCGGGATTATGGTTTGATTTAAAGAAGGCAGTGAAATGATAACCGGATGCTTTAGCCATTAGATTGTGAATTGCAGCTAGCTAGTAACAGACAAAGCTGGATGTTCACCGTACTGCACtgctagctaagctagctagcatactAGCACATCTGACCGCTTAGCATTTTTCTGTCTCCTGTCTCAGAAGTGTGGTACTAAGAATACTTTATATTCTAATGCGTCCCacatttctgcctttttttttgtaaatttgtaaataagtACATGGAATAGCATCACTCTTAGCTTTTGCTAACTACAGCTAATGAGAAATGGTTCTTGTTGACTAGCCGAAAGGCATTATGTATTCATTGGCGTGTAAAGTTCATATCTTACTATGGCAACGCTAGAGaggttgatattttttttacagtcagtGAGATAACTAaatggctgctgctgctgctgctgtaaatgCTTGACTGTGGACTGCTGGCAGCTTCGAAAGTGCAGCCACGTCCGGCTTTTCTTCctctcacacatgcactcaGATCACACATCAGGCCTCACATCCACCTGGAGCCATCGACCCATATACTGCTCTCCTCTCACTGCCAAGCTCCTCAGACTCAAACTGCAGGTGAATGAAAAATGGATCCGGCCTCTGGAGGTTGGGGAGCCACACATGTTGCCCCTGGATGACATTGGGAAGGAAAAATTGACCGTTACCCTTATTGATGCCAATCACTGTCCTGGggctgttatgttttttttcgaGGGCTACTTTGGCACTATTCTTTACACCGGTGACTTTCGGTACACTCCATCAATGCTGCGTGAGCCGTGTCTTAGGAATAATACCACTATTGATGTGCTTTATTTGGACAACACTAACTGTGACCCCACACGTTCAATTCCTACTCGCCAGCGAGCCTGTCAGCAGATGAAGGAGATCATACGAGGCCATCCAAACTACACTGTGGTCATCGGCATGTATGCTCTGGGGAAAGAGTCTCTGCTCGTACAGTTGGCGCTGGAGTTTAAGACCTGGGTGGAGGTAGATGTGGAGCGTCTGGAGACCCTACGGGTGCTGGAGCTGCCTGATGTGTTCAGCACAGAGCCAGGCTCGGGGCGGCTCCGTGCCGTTGCTCAGTCCGAGGTCACTGCGTCCAACCTGCTGGCCTGGAATAAGGAGCGGCCTACCATCGCCATACTGCCCACCAGCCGCCCTGTGGTCTCCTGCCACCCTAACGTCCATGTCGTGCCCTACTCAGACCACTCCTCCTACCAGGAGCTGGAGGACTTTGTTTCAGCTTTGCGTCCTGTGTCACTGGTGCCGATTGTGGGCAGCTGCATGCCGAACTTCTCTCTTCTATGCCAACGCAGGAAGCGACATGAGGTGGTGATACCCGAGTCAGTACAGCACTACATGAGGGCAAAACCTAATGTTCAGCCTTTTACTTTCAGAAGAAACTTTCTTCATCGTTCTTTGCACACAGTGCCTCGAGGGGTTGTGTTCGAATCACCTGGAAAGAGTCCCAGACTCCCTAGccataatgatgatgaagattcAGATGCTATGGAGGCAGAAGATGATGTAGCAGAAGTCGATTCTGAACTGGATGGAGACTCCGATTGCATTCTGTTAGACATGAGCACAGACCTCACACATGACAAGAGTCTAAATCTGATTCGGATTACATCAGAGGATGCAACTACAATTGACAGTTTCCCTCTAGACGAGACTGATTCCCTCATTGCCCTTGAAGGATCAAGGTCACCTAATATTAATAGCACAAGCAAAACCACAGCTTCACCCTGTGATAGTGTTACGGCAGTGACCCATAACAAAAATCCCAGGAAGAGGAGCCCCCAAACGGGAATCATTAACTCCAGAGTGATGTGTTCATCAATGGACAGCATTAGTCTCCATGACAGCAGCTGTGTAATGGCTTTAGCAGCTTTAACACCATCTGAAACACATCCTGATTCATCTGATGCATTTGATACAGtcgagagagagaagacagagcaGTGGCTACTCAACAACTTCACTATTCCAGAGGAAGAATTCGCATGTCAATACGGAGTCATTCAAGGTCTGCACGAGGTGTATCCACTCACGCCAATCAATATGCCAAAAGCTGAGGGTGATCCATTTGAGGCTGCAATACAGAGATTCAAATCCAAATAGGTATCTAAAACATTTAGGACATTCAAAAACCAAGACATATACTGTTCATCATCATTACAAGTAACAGAAAAGGTCAAATAGTGaataagatattaatagtgaaaaatgAAGTTGAAAAGTCTCCTTGTTTGAATGTGATGTAAATGTATTCTAATACTTATACTCACTGTTTGCCTTCTTCGAATCAGATCTGAAGAAAGCTAGGGTGGCAGAACTTCTTTCTTCTGCCTTAATCTAAGCCTTTGTGTTGATTTGCCACAATAATAACCACTACACTCTCTAAAGCTCTCCAATACAACTTGCTTAATATACAACAATTTTTTACATGTAGTGTTAAAAACTCTTCTCTGGTGTGTTCAGTATTTTTCAGCTTATTATGGTGTAGCATAATGTAGCACTGTTTTAGACCATGTTCTTTCCTACTGCAACATCATGTTTCGAGTTCTTACTGTACATCAAACTAAATCCATTATGTGTCTTGTTATTGTGCCTAGGTGGGTGTTAACTGATTGTCTTTTCAACAGTATGGAAACCATTAAGGTATTAAAATGTtaagaatgaaaataatttttcactTTTGCCACTTTATATGTTAGTTATATAGTTTTGAAATTGTACACAGAACGTTTTTGCAAAAACCTCAAATGGAAGTGTAATAAAAGGTCAGAAGGTACAAAAGGTCTTA

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0031848 protection from non-homologous end joining at telomere biological_process
GO:0031860 telomeric 3' overhang formation biological_process
GO:0031627 telomeric loop formation biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005813 centrosome cellular_component
GO:0008409 5'-3' exonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155457 lncRNA upstream 62928 12712625 ~ 12729522 (+) True G131605
TU155458 lncRNA upstream 79965 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA upstream 90949 12700712 ~ 12701501 (+) True LOC117597872
TU155155 lncRNA upstream 187816 12603517 ~ 12604634 (+) False rbm15
XR_004578624.1 lncRNA upstream 259192 12519894 ~ 12533258 (+) False LOC117597859
XR_004578530.1 lncRNA downstream 10756 12809123 ~ 12809738 (+) True LOC117597782
TU155563 lncRNA downstream 138937 12937304 ~ 12940631 (+) True LOC117597771
XR_004578521.1 lncRNA downstream 140296 12938663 ~ 12941456 (+) False LOC117597771
TU155603 lncRNA downstream 205028 13003395 ~ 13006090 (+) False G131721
TU155604 lncRNA downstream 205028 13003395 ~ 13006090 (+) True G131721
XM_026909634.2 mRNA upstream 9293 12775926 ~ 12783157 (+) True adora1b
XM_026922582.2 mRNA upstream 130305 12659028 ~ 12662145 (+) True LOC113531715
XM_026921593.1 mRNA upstream 137767 12651225 ~ 12654683 (+) True LOC113531099
XM_026927728.2 mRNA upstream 143343 12646689 ~ 12649107 (+) True prok1
XM_034306621.1 mRNA upstream 187745 12599698 ~ 12604705 (+) True rbm15
XM_026928189.2 mRNA downstream 118071 12916438 ~ 12921186 (+) True lhfpl5b
XM_026947120.2 mRNA downstream 179660 12978027 ~ 12979366 (+) True c8h1orf194
XM_026947202.2 mRNA downstream 179664 12978031 ~ 12979366 (+) False c8h1orf194
XM_026939856.2 mRNA downstream 187060 12985427 ~ 12994779 (+) True inavaa
XM_026926859.2 mRNA downstream 257083 13055450 ~ 13061438 (+) False LOC113534124
trnad-guc_1 other upstream 410380 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1081905 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 1083018 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 263569 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 265683 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 571181 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 906889 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1523805 14322172 ~ 14323450 (+) True G132595

Expression Profile