RNA id: XM_026912780.2


Basic Information

Item Value
RNA id XM_026912780.2
length 4666
RNA type mRNA
GC content 0.45
exon number 9
gene id si:dkey-70p6.1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13464131 ~ 13489999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGACACACAGCAAGGTGCTGTTCCCCCAGCACAAATGAGCAGCAGTGAGTCAGCAAACTGGCAAGCTTTACGCGGCTCGGTCAGAAGCACAGCATGTGATGCAGCACAACAGGTGGCGCATTTAACGGAGCGTTCGAGCGCCGCGCTGCTGTCACACGCACAACCGAGAGACGGAGAGACGAGAAGGCTTTTTATCCTTCAGCCATCCAGAACTGAACTGCAGAACAAGTCGAGCTTTGCCTTGCCAAAGAGGAGCTGAAGCCAGACGCTAGAATAATGGCGGTGCGGAGAGAAGGCGGTGATGATGCGGATGTCGGTCGCCGCGGCGCGCGCCAGCTCTCTGTAATAACGCGCGCGGAGCACTGATTAATGCGCACGGGGCTGCGACCGCGAGTCCCAACAGTTCAGCCGCATACTGAGAGACAGCCAGAGAGCCAGAGAGGCCAACGCAGACCCCGGAACCCCTAACCTGAGGATTTTTAAAGATGGTTTTGCAGCCATGGTTACACGCTCAGTCCCGCTTGGCTGTTTGATGTGACATTCTATATCCTGTGAAGCGTATAGCCAgtttttgcctgtgtgtgtgcctgtggcAGAGAGTGGGAGTGTACGAGCGAGCGTGTGTGAGCACTCTCACATGGCCTCGATGCAGGACGGGGTGAACTTCACTGCTCCCCCCTACGGCAAAGTGTTGCTGCTCGGGGCCATCGCAGCTGCCTCGGCCTTCGTCGTCACCATCCTGATTGTCGTGCTGTGTGTGGGCTGCCACAGGAAGGGGAAGAGTCACAATGGTACTGGTGAAGAGAGAAAGCACAGACTCATGGACATGaacatatTGCGGCAGTCAAAGCTGCGCTCCATCAGTAAGTCAGACACCAAGCTCCATGAGATGAACAGACTCAACTGCAATGGCAAAAAATCCTCCAAGAAGAACCGTCCAGCCAGTATGGACCTGCTCCTGCTGCCAAGCCGTCGCTCCAATTCAGACCTGCGAACCTCACAAGGCCGCCAGGTGCCCCAGGTGCCGTCAGGGGAGGATGTAGAGCACACATACGCTGAGGTGGGGCGTCGCTCGTCCCCCACTCGCTGTCCTGAGGCCGCGCTCAGGGGGCGGGCTGGAGAGACAGACACCCCCGCCCCCCCAGCTGTTCCCGCCAATACCCCAGCCCCACCTGATCCGGATGGGGACAGCCTGGATGGCGGGATTCCTGAGCCTGAGACCCTCCCTCAGGTAATGAACCCGCCCCCGCAGCCTCCGGAAACAGCTGAGTATGCGTGTATCAGAAAAGTTCGCAAGGTTGACAAAGCTGCCCAGAAGAGGGATAATGGCACTGAGACGGAGGAGGGGCTCGGCCAGGCACAGCGGCACAGTAGTGGAGAGATTCGGCATGCTCCGCCCAGTCATCCAGCTCCGCCCCCACCACATCCGCACAGTCAAAAGTTGCCACGCAAGAATGTGGAGGCTTTCaatcttcctttctttccaaAGGAGGCAGTGTTTATTGGAAATGGAGAGGAGTACATATGGAAGCCTCCTGAAGATGATGACATCATGTTCCAGCCCAAGCACATAGGCCCTCTGAGCCCTCACATGGGAGAAAACATGGCAGCTGGGATCTCAGATATGTATTCTAAAGTCTGCAAACCAGGCAAGAAGAAAAGAGGCATGCCCGGCTCGCCTACTGGTCCTAGGGATATTGGTGGCTATCGGACCTTGGCCCGAGGTGAACGTGATGGTGGCTTTAATGTGGTGGTGAAGCCACAGACATGGGCGCCACAGGAGGCAAAAGGCTCAAGGATGCCCCCTGGCTCAATGGAAGAGCACTGCTACGAAGCCATTGGTGCGGAGGAGAGCGACATGTCCTATGAAGCTGCAGAggttggtggaggaggaggaggaggaggtggtggaggatGGAAACGAGACAGGCCTCCACCCAATGCCAGTGCCACTCTCCGGCCCAAGAAGAGAAAGCCACAGCAGCCACAGCACcaaccacctccaccacctcccCCTCCCCAGCATACGCCCAAGATGCAGCACCTGCCAGCCAAAGCACTTTTGCTGCCAGGCGAGAATCTCTACGAGAGCATCCCTGACCTTAAGCAGGGCTCAACCACATCCAGTACCACCACCATCTTCACTTTTAATGACGGAATGGAAATGTACGTCACTGGCCTGTAAGGGCTCAAACTTAAATCTCATATGGAAAGACCCCCCATCTTATAGTTGAGTGGGAAAGAGGCTTGATAAGGCAACAACTCTTCctgcactcattcacacatcaTGTTTACATTTCAGCCCTATGGTTCCCAAGTAGCCCCACACATTGCCTTAGAGAAGCAGTCTGGAAGAGGGGGCTTATCTTACAGAAGATATTGTGcaaaggttttcagtggggATGCTATTGCATCATACATCAGTTTGGTAAACACTCATTGCACTACCACTTCATGTCTAACATGGTGTATCAGTATTAATTGCCTATGGATTGGGATTTGAAAGTGTGGTGGGAAAAAAAGTGATAACACCAAGGAAAAGACTTAGGTAAAAACTTATCTCACTTAATCACATATCTTTCGAGAGTAGCAGACATCAGAATTCACAAATCACCAACAAATCACCACATAGGGGAAGCCTGTTTAAGGTATTCTCCAGAATCCTGTTTTTGATAGTACACTCACTTGTGCATTAGTTTCCATCTAAGTTTCCATCGGAATTGCgggtttcttttgtttaattttatgttaattccAAAGGAAAGGACAAAATGAGCACAACTCTACTGAGCAGAAAGAATACTAAAATGGCACAGAGTATTTACACTCAATGTTTTAGAGTATATTGACAGAGAAAAATTAtgcagtgggaaaaaaaagcccCTTATTTTAGTGACAAACCAATAGCAAAATATAACTATTAATGAAATTCTGGCTAAGGCCACTATTGTCATCCCTTGTATTGTAGCTTGACAATGAACACAGGCCTTtatctaaattatttattaatacatcCACAAGCTTTGGGAAAATATGTGGCACTATTTTTCTAGTGATAAAGCCTCtatttctgtaaggaaattctatgggaaataaatataaaatatagatataaaaacagtattcccaatcactgaatcacacaaCTGCATATTGGTCTGCATATTCAAAAGCACAGAATCATATAATGCAAATTTCCTCTTTCAGCACTTAAATACATTATAGACTGTTTTGAGTCCATTTGAAAAATGAGAGCTAAAATGAATTACATGATAATTATAGTAGCAATTAAAAAAGAGATCCTAAAAAGAATTAGCAAAAGCTcagggaaagtgaaaaatatataaaggtaATTGAATTAGTTGCACATGGAACTATTTTCCTCTAAGTGAAACAAAGAGAGTTTAGAGCATTTTAGGCATTGGACCTTGCCCTTCAGAATggttttttaatctttttgttttcataGTACTAACTTTTTTCGTTTTAGCTCATAACATAAACACTTAAATGGCTGTGTATGAAGTCACCACTGCcgtacaatacagtacaataatgTTTTACGTTGTTAATACTGTTAATGCACTTTGCCTGATAAAAAAAGAtgcatgtattaaaaaaaaacatacaaatgaaaaaaggtgatgaaaaaaaacaagttatcTGGTGTCTGAGAATGGTTTATTTCTTGCTGTTGTCGGTTGCTTATTTGATTTAATTGCCTTTTCCTCTGCTAAAGAGAGAGCACAATGTTTTGCTTCAAGACTGATGAATCAAGGTGAACTTTGTCTACATCTGACATTACACAACTGGAAGCAGAATGTGACTGGTCATAGTGAATAAATCATAGACAATTCTCCTCATTTCTCCAAGTGAACACCAATCAGGATGTCTGCATTTGGCTCAAACACCTTTTAGGCGGACATATGCTCTAGGTGGAATTTAGGTGGAATTTCACCCAACTGTCTTTCAGCACATTAATCTGCTGTATAATAATTGGGAATAATGTAAAGAAACACTCTATTGATGCTATTGAAATGATGGTAACCAGTGAGTATAGTGCGCTACAGTGGTTTTTATGGTTGTGGTTTTAATGCACACAGCATTATCTGTGACGTTCCTCaagaattgaagaaaaaaaaaaaacgagttaACCTTCACCAGTGAGAATTAATATTAGTGTAAAAAGAGGCTTGAACCCATGGAGAAAGACTGCAGTCTATGAGTCTGGCACACAGTCACTGTCATATATGTTGGAGCAACgttgtaaatattttacaagaaatgaaaagaacagGAGGATCAAGGTGAAGTTGCCCTAGGTGTATTTGAACATatgtgtttcttttcatttgttcttttgGAATGATTTTTCTCTGGTGAAAATTTTGCTCAGCAGTATCTCTGTGGGTTTTGATGTGTttcgttattttttttattcttttcccgTGCCATTTTGAGCTATTATGTGTATTTCAAAGATCAACTGAGTATTAGTGTGGCAGCTgatgttgtgtgtttgcttatCAGACAACAGGGTTGTGTGTTCCAGCCGTGTAAGTACTCATGTGCAAAAgattgtaatgtttttataacaaaatgACTATTCATAAAAAATGTCAACAAGTTTATACTTTTCTAATAAAGTAGCACCTAAAAACCTG

Function

GO:

id name namespace
GO:0050852 T cell receptor signaling pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155890 lncRNA upstream 24401 13437922 ~ 13439730 (+) True G131947
TU155891 lncRNA upstream 27173 13435501 ~ 13436958 (+) True G131948
TU155938 lncRNA upstream 28837 13433917 ~ 13435294 (+) True G131987
TU155931 lncRNA upstream 41917 13420705 ~ 13422214 (+) True G131980
TU155919 lncRNA upstream 63851 13392525 ~ 13400280 (+) True G131972
TU156048 lncRNA downstream 10390 13500389 ~ 13500683 (+) True G132081
TU156088 lncRNA downstream 80393 13570392 ~ 13570972 (+) True G132115
TU156119 lncRNA downstream 300472 13790471 ~ 13791279 (+) False LOC113527348
TU156121 lncRNA downstream 301863 13791862 ~ 13792709 (+) True G132139
TU156118 lncRNA downstream 303157 13793156 ~ 13794305 (+) True G132136
XM_034306953.1 mRNA upstream 77746 13372492 ~ 13386385 (+) True tpd52l2a
XM_026926458.2 mRNA upstream 77746 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306954.1 mRNA upstream 77746 13372492 ~ 13386385 (+) False tpd52l2a
XM_026926468.2 mRNA upstream 77746 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306955.1 mRNA upstream 77746 13372492 ~ 13386385 (+) False tpd52l2a
XM_034306380.1 mRNA downstream 33722 13523721 ~ 13541674 (+) False emilin3a
XM_026924721.2 mRNA downstream 47412 13537411 ~ 13541674 (+) True emilin3a
XM_026913672.2 mRNA downstream 126605 13616604 ~ 13685739 (+) False magixa
XM_026913655.2 mRNA downstream 126608 13616607 ~ 13688929 (+) False magixa
XM_026913646.2 mRNA downstream 126609 13616608 ~ 13688929 (+) True magixa
trnae-cuc_18 other upstream 94512 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 400009 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 402123 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1082061 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1753586 11709454 ~ 11710545 (+) False porcn
TU156117 other downstream 215257 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 832173 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1489834 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2512062 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2512062 16002061 ~ 16018783 (+) True G133631

Expression Profile