RNA id: XM_026912832.2


Basic Information

Item Value
RNA id XM_026912832.2
length 5993
RNA type mRNA
GC content 0.42
exon number 11
gene id slc20a2
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14199703 ~ 14232129 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATGTAAACCCGCAGCGCCAGTCAGGACAACATGGTTGCTTGACTGAGCACTGTGTGAAAGGCGCGTGCTGGAATCTCAGCTGCTAGCTGCTACAGAAGAAAACACGACCTTTTCTCCTTCAGCTTCCTTTTCTTGAAGTCTAGGTGGCGAATAATTTTGGACTACTCTCTCATTTCCTAGCTGAGGACTTCTTGGTCAACGGGACACGAAGAGAGCCAAACAATGGAATGCCCTCTCCTGCCTGCACTGCTCACAGCTTCAGAGACTTCAGAGGTTAAACGGCTTAGTTAGCAGTGTACCTCTCCCCCTAGAACACACGCAGCCAGGGGAAGAAGAGCgtcaaacaaaaaagaaggggattttttttttcctttaaaaacagAGCACCTTACTCTAGCACTCTAgagttatttaattttattttaattaaatttaagaaCAGACATCATGATGGATTTAGCGCCGTATCTATGGATGGTTGTAATTGGCTTCATCATCGCCTTCATCCTGGCATTTTCAGTGGGAGCCAACGATGTAGCGAACTCATTTGGCACGGCGGTGGGCTCGGGGGTGGTCACATTGCGCCAGGCCTGTATCCTGGCCTCCATTTTTGAAACGCTGGGCTCCATGCTCCTTGGCGCCAAAGTGGGTGAGACCATTCGGAAGGGGATTATAGATGTCAGCTTGTACAATGACACCGTACCCATACTGATGGCAGGCGAGGTCAGCGCCATGGTCGGGTCTGCGGTTTGGCAGCTCATTGCCTCATTCCTTAAGTTGCCCATTTCTGGAACTCATTGTATAGTGGGGTCTACTATCGGCTTCTCAATGGTGGCCATTGGCACCAAAGGAGTACAGTGGATGCAGCTAGTCAAAATTGTTGCCTCCTGGTTCATCTCTCCTCTACTGTCAGGCCTCATGTCTGGCCTACTCTTCTATGTCATCAGATATTTCATTCTTAATAAAGACGATCCTGTTCCAAATGGCCTCCGTGCTTTGCCCCTCTTCTATGCCTCAACTATCGGCATCAACACATTCTCCATCATGTACACAGGAGCTCCCTTGTTAGGTCTGGAGATGCTCCCAGTGTGGGCCATCGCCCTCATCACCCTGGCCGGCTCTCTGGTGTGTGCTGCTCTGGTCTGGATCTTTGTCTGCCCCTGGATGAGAAGGAAAATAGCAAGTCGGCTGAAAAAAGAGCATGTTCTCTCACGCATCTCTGATGAGAGTCTAGATAAGATTcctgaggaagaagaggaggctCCGGTGTTTAAAGAGCTTCCAGGGGCAAAGAGTAATGATGATTCTGAGCTGCCCTTGACTGGGGAATCCACTGGGGAGCTAAACAGCCTGGCCAATGGTGGCACCGTCCTTCCTAACGGCCGGGTGTACGGTCGCACTCACTCCATGACAAATGGCTGTCTGAAGTCGCCAGTGTCCAACGGAAGCTTTGCTTTTGATGGACATGTGCGCAGCGACGGCCAGGTGTACCACACTGTGCACAAGGACTCGGGTCTCTACAAGGATCTGCTACACAAGATCCACGTGGGCCGGCTGGAGGAAGAGCGGCCCGACGTCAGCCACCGGGTCCTGCGCCGCAACAACAGCTACACGTGCTACACAGCGGCCATCTGTGGCATGGCCGTTCAGCCCCTACTGCGCTCAGAGTCGAGTGCTGCAGCGCCACCTGAGGACAGTGAGAAGCTGGTGGGTGACAGTGTCTCCTATTCTAAGAAGCGTGTCCGTTATGACAGCTATTCTAGCTACTGCAATGCTGTGGCCGAGGCTGAAATCGAGGCAGAGGAGGGGGGTGTGGACATGAAAGTGGGATCTGAGAAGCTTGAGTCAATGCAAGGTGCAGGAGGGGTGCTGGATGACTGCGCTGATGAGGACAAAGAAGAGAAGGACAAGCCCCAGGTTTTTCTGCTCTTCCATTTCCTGCAGATCCTCACTGCCTGCTTTGGGTCCTTTGCACATGGTGGCAACGATGTCAGTAATGCCATCGGCCCACTGGTGGCACTGTGGATGATCTATGACCAGGGCGGGGTAATGCAGGACTCGGCCACTCCTGTGTGGCTGCTGTTCTATGGAGGCGTGGGCATCTGTGCTGGCCTGTGGGTGTGGGGACGCCGCGTAATCCAGACCATGGGCAAGGACCTCACCCCCATCACGCCTTCCAGTGGATTTTGCATTGAAGTAATGAGTGCTCTAACAGTGCTTGTTGCTTCAAATGTGGGCATTCCCATAAGCTCCACCCACTGCAAGGTGGGTTCAGTGGTGGCTGTTGGATGGCTGCGCTCGCGGAAGGCGGTAGATTGGCGTCTCTTCCGGAACATTTTCCTGGCTTGGTTCGTCACGGTTCCTGTAGCAGGCCTGTTCAGCGCCGCTGTCATGGCCCTGTTCGTCTACGGCATCCTGCCTTTCGTATGAGGGCGAGGaccagagatggagagaattaTAGTAAGGTGATTGGGAAGGCGAGGGAAAAAATTTTATAAGACCAGGAGGTGGTAAGATGAAAGGACAGATTGAAAAAGAGTTAATGGGGGATGGCCATAGAGAGGGTGTTTAAAAGCTGCCTAGGATGCATCTAGAATCTTCTGATTAACTGTCCTTTGTTATCTCTACAAATGTAtctacttttttctgttttagctGTTGTAATGTTACTGAACACCGTAGGTCTCATGCTTCATCCATAACACAATGAAGCAGTAacacaaaaaaggtttctcATACAAAAGTGATCATGCCAACAAAATTTGCTAATCCTCAAGGTTGAGACTACATGAGCAAATTCTCAGATCAGCACATATGaactttatatatacacacacagacaaattcaTGCATTCTTCAATTACCACACactatactgatactgatacatgACAAGAAGGTGTTTCATAAAGCACCATACAGCACAGTTTAGATCAGCGTAATTTTGAAAGCACAAAGCTTCACTGACCTACTTCACTAAATGGCTATATGAGGCTTTATTTAATCTGaaatatacactgtatgatAAGAGCTGCAGTATACTATGTCCACTCAAATGAAAAGCTGGTGATGTAAATGTAGGTAAACTCTTAAACATTGGAGGCCATGTAAGGTCTACACTGCAATAACTGCTGTATCTCTTGGAACTTTGACTTAGGGTCCCTAAAATcagctaaatgtaaatattgtgttaTTCATCATACCTCAACAAGTCTCTGCCATTTAAATAAAGCTAGTGAGTCATATGAGGAGGATGGAGTAAAACACTATAAGTCCGATATATGATTGTCATtgttgggttaaaaaaaaaaaaagctctttttatcatatttattcagATTATAAAAGATTATAGAACTTTtcataaaagtttattttaaagaatataaagtAAACAACAAAACGCTATCTTACTTTTAACAGTGTGTGCTAACATTtcttctgtaaatattttctgcGATAGACTTTGGATAAGCTCTGTATTTAGTCTCTAGACATCATAGAACCTGCAATGTAGAGATTAAGCTTTGACAGAGCAGGCACAAGCTACTGAGGAttactaaagaaaaataaatgcatcaagGACATAACATTTCTAACAAATCAAGAGCTACAACACCAGAAACAccattttatatgatttttagATACGATTTGAGTCCAGCCCAGTTATTTTGTTATTGGATTTCAAATTTGAGCTAAGAATCAATCCCCACACAGTAATTTGTAAAAGGCTTATACTCGTGCACACCAAAATGTACCACTCTCTCGATAATTAATCACATTTCATTTCTAAATCACTAGAAtaggagaaaaacaaaatattgtacatattttaaaattacatttaggCACTTTAGGTGTTTTAAAAGATGTATATTATCCAAATGATGATGTATTAATGTTCTTGCACTGATGTGATAGCTATTGGAAAAAGATTTTGGCCCTATGCACCAAGACCTCTAAGCAATACAGCAGGTGCCTCAATCATTCTCTTAAAATATTCACCAAAGATTAACTCAGATTTCATGTATTCCCAGTTAGGCTTAAATGCATTCAATCATTTTGTCTTTAGTCTCTCATTCGTTATTTGAAAAGCCAAACACAAAGTAtctgtatacagtatttatgtacACTGTAACAAGGCATGCCAATAGAATCCAACAAAAATGCCAAGATAATGCCTAAATGTGCAGATATAGCCAAAATCTACTTTAACAGTACAGTGCATTGCACCAGCACATACGCAAATACAcccacgcacacatacacaccagcaTCTGCGCATACTGTTTGGGAAAGGCAGTGTTAGAACTCCAGTTCAGACAGGCATGGCTACTGGTGAAACGATATGACGCCTCTCATTCATTACACTGTCACTCAGTTTAATCCACAAAGCTGTCTAGAATCTGGCCATGAAGTCAGTGCCAACGGTTACTAGTTACTCATTTACAAAATATGGTGGTCATAAGTGATTGGTGCTGGTCTAAATAACACCTTAATGCTCTGCCTACAGAATGTGGCTTTGAACCAATGCAAAGTGTTAACCTTGTTTTTCCTTGTGAGTGTActatacttttttgtttgtttgtttttttttatctctcatCATGAACAAATCTATGCTTCGGTGCCCATTTGCCTTGTAATATTGTGCTTTACTGTTTGTCGAATACAGTAAATTCAGTACTGTGGTGTTTACATTATCACACGTAGGTAGAAATAACTCCGTACTGTTGCCTAAAATTGACAAACTATTTACTACACAATTATGTATAAGATATACAGGAATAGTGTGAGGTATCTCATGTCATTTCGTGTTTTAGTTTGTAGCAGTGTGAATTATGATCATATGTTACTTTTACACTGCtatatgtagttttaaaaaaatgaatcaaactgTAAAGGtgagtgtgattaaaaaaaaaaatcattagataTATGAATATCATTCAAACTATATTTTTCTACATGTATGAGTTTTACCTTGAGTGAATTTTGGAGAGAGAACTGGGCTAAAATGAGTCCTAGCAGAAATTTGTTATATTGAGAAATGGatctacatacagtatgtactaaTATAAAGTTCTCTCAATTAATGCAATATGTAACAGTATCATTCAGGTAAGGGTTTAATATACTTTAAAATGGTCTTGGAGAGATTCCACAAGTCCATTATCACTGGAATTCTGTCCCTTGTTTATAAGCATGGTGGCTTATTCAAATTCAACAATGTTAAAGATTATTTTAGCAACGTACTTGAACAAAAGTAGTTATACCATAGTTTAGGCAAGGCAGTTTTTGACTAAGTTTTTGACTACAAGCAGCAGATGATGTAATTTTCAGCAGTTGTCCTCTTTCTGTCACTAAGACATTAatgtgtgagcagtgaaacctCATATGACCCGTGTTTCTTTGGGGATGCAGTAGCTTGTGTGGCCACAGGATGGTAGCATATAACTATTGTAAACATCCTTCATCTAGGACAATTGCCAATGGCTGCATTTCATAAAGCTATATAGAAAACTCATCAGATCCCTCTGAAATTACTTAGTTATTATCTTTATGAACCTAATATGATCCAACCTACTATGACTTCAGTGTATAGTAACATATCAGTGAAATTGGACAATGTGCAAAGTAACCATCCAGTTAGCTGTGTAGATAAATGTTTCCAGTTTTGCTTGGCATCATATCAGCATTCTCCTTTAGTGGCTGTACTGATTGCATTTCTTATTTGTCTTCTCATTCGCATTGAAACCTAGAGCGAATGTAGCCTGCTCCCCTGCTGATGCCTGCTACGTGTTTTTCCCTGTGCTGCCATGCTGTAAACAGTCTGGAACCCTCTTAAACCAGGGCCATAGACCTAAATACTACCCTTATCTGCATATGTACTGTATTactgtttctatttctttttgGAATTTTTGTGAGAGTTGTCTGCATTTTGAACTAATTAAATTATGGGAATTAAAACGACAAAGAATAACA

Function

GO:

id name namespace
GO:0006817 phosphate ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005315 inorganic phosphate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156373 lncRNA upstream 79288 14116975 ~ 14120415 (+) True G132361
TU156411 lncRNA upstream 111822 14085652 ~ 14087881 (+) True G132391
TU156342 lncRNA upstream 177054 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA upstream 186082 14010503 ~ 14013621 (+) True G132357
TU156341 lncRNA upstream 250895 13891210 ~ 13948808 (+) False dock8
TU156430 lncRNA downstream 899 14233028 ~ 14234254 (+) True G132405
TU156445 lncRNA downstream 13447 14245576 ~ 14246134 (+) True G132420
TU156449 lncRNA downstream 16993 14249122 ~ 14249718 (+) False G132424
TU156452 lncRNA downstream 16993 14249122 ~ 14249815 (+) True G132424
TU156615 lncRNA downstream 28150 14260279 ~ 14260655 (+) True G132569
XM_026924980.2 mRNA upstream 27910 14154858 ~ 14171793 (+) True ercc6l2
XM_026925009.2 mRNA upstream 27910 14154858 ~ 14171793 (+) False ercc6l2
XM_026924990.2 mRNA upstream 27910 14154858 ~ 14171793 (+) False ercc6l2
XM_026925000.2 mRNA upstream 27910 14155340 ~ 14171793 (+) False ercc6l2
XM_026925017.2 mRNA upstream 27910 14157036 ~ 14171793 (+) False ercc6l2
XM_026924367.2 mRNA downstream 34496 14266625 ~ 14269429 (+) True mpeg1.1
XM_026924381.2 mRNA downstream 40859 14272988 ~ 14279281 (+) True prf1.5
XM_026924399.2 mRNA downstream 40859 14272988 ~ 14279281 (+) False prf1.5
XM_026924390.2 mRNA downstream 40859 14272988 ~ 14279280 (+) False prf1.5
XM_026924161.2 mRNA downstream 689014 14921143 ~ 14937444 (+) True ap3s1
TU156117 other upstream 492153 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 830084 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1135581 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1137695 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1817633 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 90043 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 747704 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 1769932 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1769932 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2170619 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile