Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026914180.2 |
| length | 1058 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | taf10 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 11906748 ~ 11910004 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006352 | DNA-templated transcription, initiation | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU154767 | lncRNA | upstream | 188864 | 11716832 ~ 11717885 (+) | True | G131061 |
| TU154744 | lncRNA | upstream | 217075 | 11677903 ~ 11689674 (+) | False | uck2a |
| TU154619 | lncRNA | upstream | 354718 | 11548962 ~ 11552031 (+) | True | G130960 |
| XR_004578615.1 | lncRNA | upstream | 547369 | 11355449 ~ 11359380 (+) | True | LOC117597850 |
| XR_003402857.2 | lncRNA | upstream | 958403 | 10944657 ~ 10948346 (+) | True | LOC113527270 |
| TU154974 | lncRNA | downstream | 71761 | 11981765 ~ 11988425 (+) | False | foxp3a |
| TU154975 | lncRNA | downstream | 82815 | 11992819 ~ 11993039 (+) | False | foxp3a |
| TU154976 | lncRNA | downstream | 84410 | 11994414 ~ 11994800 (+) | False | foxp3a |
| TU155067 | lncRNA | downstream | 307000 | 12217004 ~ 12217214 (+) | True | G131279 |
| TU155070 | lncRNA | downstream | 316148 | 12226152 ~ 12226362 (+) | True | G131282 |
| XM_026915550.2 | mRNA | upstream | 2492 | 11882246 ~ 11904257 (+) | True | efhd2 |
| XM_026920455.2 | mRNA | upstream | 30661 | 11861457 ~ 11876088 (+) | True | LOC113530451 |
| XM_034306543.1 | mRNA | upstream | 44869 | 11858468 ~ 11861880 (+) | True | fhad1 |
| XM_026920481.2 | mRNA | upstream | 49496 | 11854167 ~ 11857253 (+) | True | LOC113530463 |
| XM_026937381.2 | mRNA | downstream | 37447 | 11947451 ~ 11957403 (+) | True | suv39h1b |
| XM_034306298.1 | mRNA | downstream | 41723 | 11951727 ~ 11957403 (+) | False | suv39h1b |
| XM_026919562.2 | mRNA | downstream | 69182 | 11979186 ~ 11995218 (+) | False | foxp3a |
| XM_026919580.2 | mRNA | downstream | 71788 | 11981792 ~ 11995852 (+) | True | foxp3a |
| XM_026919590.2 | mRNA | downstream | 71788 | 11981792 ~ 11995852 (+) | False | foxp3a |
| TU154763 | other | upstream | 196204 | 11709454 ~ 11710545 (+) | False | porcn |
| TU154756 | other | upstream | 197317 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154757 | other | upstream | 197317 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154760 | other | upstream | 198788 | 11705655 ~ 11707961 (+) | False | porcn |
| XR_003403367.2 | other | upstream | 272905 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| trnad-guc_1 | other | downstream | 471995 | 12381999 ~ 12382070 (+) | True | trnad-guc_1 |
| trnav-cac_9 | other | downstream | 1151932 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| trnaf-gaa_25 | other | downstream | 1154046 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnae-cuc_18 | other | downstream | 1459544 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| TU156117 | other | downstream | 1795252 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
