RNA id: XM_026914347.2


Basic Information

Item Value
RNA id XM_026914347.2
length 2696
RNA type mRNA
GC content 0.49
exon number 11
gene id ddx20
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9651871 ~ 9658559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCACGAACAAGTGAAACAAGGCGCACGGCAACACAGGAAGCGACAAGTATGGCGGCGTGTCTGAAGAAAGCTGCTCATGAGATTGATGTTAGAAAGCGGACAGATGATGTTCTGTCTTCAGCTGGAGTGGAGTTCAGCTCCTTACTGCTTTCTAAACCGGTTCTGGAGGGTTTGGCAGCTTCCGGCTTCCAGAGACCTTCACCAATCCAGCTGAAGGCGATTCCACTGGGGCGGTGTGGACTGGatcTTATTGTTCAGGCTAAATCCGGCACAGGAAAAACCTGTGTGTTCTCCACCATTGCCCTGGACTCCCTGCTACTGGAAAATGCTGCCACTCAGgtcCTTGTTTTGGCTCCGACCAGAGAGATTGCTGTGCAGATCCATGCGGTGGTGATGGCGATAGGCAGTGCCATGGAGGGGCTGGAGTGCCACGTGTTTATTGGTGGACGACCTGTGAGTCAGGACAAACTCCATCTGAAGAAATGTCACATTGCTATCGGATCACCAGGTCGTATAAAGCAGCTGATCGAGATAGGAGCTCTGCTGACGTCAAGTATCCGTCTGTTTGTTCTGGACGAGGCGGATAAACTGCTGGAGGAGGGCAGCTTCCAGGAGCAGATCAACTGGATCTTCTCCTCTCTGCCGGTGAATAAACAGATGCTGGCACTCTCAGCAACTTACCCAGAATCCTTAGCGCAGCATCTGTGCAGGTACATGAGAGAGCCGACGTTTGTGCGACTGAACCCCACTGATCCTGGACTCCTCGGTCTGAAGCAGTTCTATAAGCTGGTGCATGCTCATGCCCTGCCTCATAAGATCTTTGAGGAGAAAGTGCAGAATCTGCTAGAGCTGTTCAGTAAAGTTCCCTTTAACCAGGCACTGGTCTTCTCCAATCTGCATACAAGGGCGCAGCACTTAGCTGATGTACTCTCCTCCAAAGGCCTGCCTGCAGTCTGCATCTCAGgcagtTTGAGTCAGGAGCAGAGGCTGGAGGCGATGTCTAAGCTAAAGCAGTACCAGTGTCGAGTTCTTATCTCCACTGATTTGACGTCACGGGGTATAGATGCAGAGAAAGTGAATTTGGTGATTAATCTGGATGTGCCTCAGGACTGGGAGACATACATGCACAGGATTGGCCGCGCCGGACGCTTTGGAACTCTGGGGGTTGCTGTAACATATTGTTGTCATGGAGAAGAAGAGAATAAAATGATGGCCATTGCTCAGAAGTGCAGTGTGGCTCTTGGCCCATTACCAGATCCGATCCCAGCTGGGCTAATGGAAGAGCTGTGTGATTGGAACGTGATTGTCCAGCCTCCTTCAAAAAATGACCTTGCTCTTTCCCTTGGATCCAGTGTAGAAAAGAAACAGCCCAAATCTGAGCAGAGAGTCTCCAAAGCCCCCAAAGAGCCTCGGCACACACTTCTAACTAAAGAGCAGACTGAGAGTCACAGTCCAGCTAGAACCCAAAAATCCAGTAGTGACCGGAACAAGGGTAAAAAACCTGTCACTACCCCTGACCTCTTACACAGTGCTGAAAATCTAGAGCCTCATCCAGCTCTTACAAGGAAGGAAATGCAGGAGGCCCTTCCCAAAATCCCTCCCCTGCCCTCTTTTAAACCCCAAGGAGTGAGACCTGTGTCCTTCGCTGAGGCCATGGCTGACTTTGAGAACTTTATGACGAATGGCCCTGGACAATCAGTTGAGATCATAAGACAGTATGGAACACATGATGAAGTAACTACCATGGCTGATGGGCAGCATAAAAACAGtgctgacagtagtgctgggaCAGGTGGCGCTTGTATTAAATCTTATAGTAAACATGAAGAGCAAGTCTTAATGGATGGAATTGCTCAGTCTCAGCAGTCAGTGGGTTCAAGCTCTTGTCCAGTGACCTCTAGGTGCATGTCTGGCagcttttcttcctctttagACAGCGAGTCTGAGATGGAGACAGAACAGAAAACGGATGCCTCGGCATCCAGCTCTCTGTCCAGTGCCCCACACCTGAACTGTGGACTGCAACACATTGCAAAATCATCAATGCACGCAGCCAGTACAGCAAAGCAGCCCATCAAACTCAGACCGAGTCCTTCCAAACCTCAAATCAAGACTCATCATCCTAACAATCACACTCAGGCTCTTCAGCACTGCAAATCAAGATCTGTGTCTGAGGAGAAGAGGGCTGGGAAGACTGCCAAGGTAAAGGAAGGGAGCTGGAGGACACGGAGAAGGACACAGGAGGAGGACGATGACGATGACGAGGAAGAGGACAATGAATCCTCTCAAGAAGAAGGGAATGGACATGAACAGGACTATTGGAGAGCATGTTACCAAGCCTGGGAAGAATATTACAACTCTTTGAGTTCAGCCCATTACTACCACTCACATTATAACTGGCTGGCTGCATATCGCATGAATGCTGTATACATGATGGAAATGATGAAACGCTGATTCAAGAACAATAGAAGTCTCACTTCTGGGGAGATGCAAGAAACCTGGTGTCAGATGTATAGCACATGTAGGAGGTCTGAATCTGAGGTGATGCACTAGTGCCTAAAAAGTCTGTGTTAAGACAATGTTGACCAGTCATTAAGAGAGTGTTATGGCACTGTATTGTATCATGGATCAATTAACAATTCTCACTTTACAGTGTATTTATAGCATTGGCTAATAAACGTCTTCTAATTGAAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K13131 DDX20, GEMIN3; ATP-dependent RNA helicase DDX20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153514 lncRNA upstream 49339 9600195 ~ 9602532 (+) True G129971
TU153354 lncRNA upstream 156141 9450562 ~ 9495730 (+) True G129849
TU153546 lncRNA downstream 2687 9661246 ~ 9664685 (+) False LOC113532719
TU153547 lncRNA downstream 13508 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 57097 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 374791 10033350 ~ 10033565 (+) True G130231
TU153848 lncRNA downstream 427002 10085561 ~ 10147134 (+) True G130285
XM_026913306.2 mRNA upstream 14848 9624300 ~ 9637023 (+) True rap1aa
XM_034306494.1 mRNA upstream 30915 9615604 ~ 9620956 (+) True LOC117597805
XM_034306486.1 mRNA upstream 37177 9610793 ~ 9614694 (+) False LOC117597803
XM_026924266.2 mRNA downstream 2256 9660815 ~ 9665693 (+) True LOC113532719
XM_026922828.2 mRNA downstream 275733 9934292 ~ 9965096 (+) True cttnbp2nlb
XM_026919256.2 mRNA downstream 354781 10013340 ~ 10031188 (+) True wnt2bb
XM_026927465.2 mRNA downstream 397670 10056229 ~ 10077521 (+) True mov10b.2
XM_026923227.2 mRNA downstream 509826 10168385 ~ 10279934 (+) True si:ch211-254n4.3
TU152708 other upstream 1339215 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1680122 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2220874 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2224314 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2855795 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 699387 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 897959 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1211575 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 1963743 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 1963751 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile