RNA id: XM_034306581.1


Basic Information

Item Value
RNA id XM_034306581.1
length 5310
RNA type mRNA
GC content 0.50
exon number 27
gene id kdm5bb
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9547306 ~ 9573038 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCAGCCGTCCTCCATGTTGCCTTTgtggagtGAATGGCAGCCTCCATTTGCGTGTGACGTCGACAGACTTCATTTCACTCCTCGGATCCAGAGACTCAACGAGTTAGAGGCACAGACGAGGGTCAAACTCAATTTTCTGGACCAGATTGCTAAGTTCTGGGAGCTTCAGGGATGCGCTCTTAAAATTCCACACGTAGAGCGAAAGATACTAGATCTATACCAGCTAAACAAGCTTGTTGCAGATGAGGGAGGTTTTGATACTGTATGTAAGGAGCGCAGATGGACAAAGATAGCCATGATAATGGGCTTTGCACCAGGCAAGGCAGTAGGTTCACACTTGCGTGCTCACTACGAAAGAATCCTCTACCCCTACAACCTCTTCCAGGCTGGGGCCAACCTGCTGTTCGTTCAGAAACCCTCCCTCTTGGAAAATGGTGATGATAAAGAATATAAACCTCACGATCTGGTGCAAAGGCAAAAGGTGCAGGTGCAACCCAGCGATACATGCACACCTGCCAGGAGAGCCAAGCGAATGAAAGCTGAGTCTGGCTGTGGGAAGTCAGACGGGTGTACAGGAGGAGAGGTGTGTGAGAACAGGCCCAATCTCAGGAGACGGATGGGCTCTTTTGTAGCAAAACCTGAACCAGTAAAGGAAGTACCCATTCAGATTAAACAGgagcctgtggagagagagctGCAAACTGAGCCAGAGAAAACCAAATCGCGCTATAAGAAAAGTGCTCCACAGCCACCTGTCAGCGTAGTGgacctgtatgtgtgtttggtaTGTGGGAGCGGTAGTGATGAGGAAAGGCTGTTGTTATGCGACGGCTGTGATGACAGCTACCACACTTTCTGCTTGATCCCGCCCCTTCATGATGTCCCTAAGGGTGACTGGAGGTGCCCCAAGTGTCTGGCACAGGAATGCAGTAAGCCACAGCAGGCATTTGGCTTCGAGCAGGCGCGCAGAGAATACTCCCTCAAAACGTTTGGGGAAATGGCTGACTCGTTTAAGTCTGACTACTTCAACATGCCTGTTCATatGGTGCCGACTGAGCTGGTAGAGAAGGAGTTCTGGCGGTTGGTGGGCACTATCACAGAGGATGTGACGGTAGAGTACGGAGCCGATATCGCTTCCAAGGAGTTCGGCAGCGGCTTTCCCATTAGGGGTGGCAAATTCAAGGTTGCACCGCAAGACGAGAAGTACTTGCTCTGTGGGTGGAATCTGAATAACATGGCAATGATGACTCCATCCGTGTTGACCCATGTGACAGCTGATATATGTGGCATGACCCTGCCCTGGCTGTATGTGGGCATGTGCTTCTCCTCTTTCTGCTGGCATATCGAGGACCACTGGAGCTACTCCATTAACTACCTGCATTGGGGAGAGCCTAAGACGTGGTATGGAGCTCCAGGATTTGCTGCTGAGCAGCTGGAGGCTGTGATGAAGAAGCTGGCACCTGAACTATTTGAGTCTCAGCCAGATCTCTTACACCAACTCGTTACCATCATGAACCCTAACACGCTCATGGCCCACGGAGTACCAATTTACAGGACCAATCAATGTGCAGGAGAGTTTGTCATCACATTCCCGAGAGCCTATCACAGTGGTTTTAATCAGGGCTTCAACTTTGCAGAGGCTGTGAACTTCTGCACCGTGGACTGGATGCCCTTGGGCCGTCAGTGTGTGGAGCACTACCGCTTGCTGCATCGTTACTGTGTGTTCTCCCACGATGAGATGATCTGTAACATGGCTGCCAAAGCTGATAAATTGGATGTGGTTCTGGCCTCAGCCGTGCACAAAGACATGGTGCTAATGATCAGTGATGAGAGGGACCTCCGAGAGCAAATCTGCAAATCGGGAGTGGTGCAGTGTGAGTTGTTTGAATATGATTTGCTGCAGGATGACGAGAGACAGTGTGTTAAGTGTCGCACCACCTGCTACCTGTCTGCTCTCACCTGTCCATGTCGGCCGGGTGAGCAGGTGTGTCTACACCACGCTCACCACCTCTGCCCCTGCCCTACCTCCAAATACACATTCAGGTACCGCTTCACGCTAGATGATCTCTACCCCATGATGAATGCTGTGAAGCAAAGGGCTGACTCATATGACGAGTGGGCGTCACGCGTAACTGAGGTCCTTGAGGCCAAACTGGACAAAAAGCGCAACCTGTCTGTGTTCCATTCTCTGCTTGAGGAGTCAGACAAGAACAGTTTTCCGGATAATGATCTGTTACGTCACCTGAGAGTGGTCACTCAGGATGCAGACAGGTGTTCATCTGTGGCACAGCAGCTTCTCAATGGCAAGAGACAGACCAGGTATCGTGCTGGTGGAGGAAAAACTCAGAACCAGTTGACTGTAGAGGAAATGAGGTCATTTGTGCGTCAGCTTTACAACTTGCCCTGCAGCCTAGTGCAAGCACCATTACtgaaggAGCTGCTGAACCGTATCGAGGATTTCCAGGCACACAGTGAGAAAGTTCTGTCTGACACTGTGAGTGCAGATTCTGTGGTGGAGATTCAGGCCCTTCTAGATGAGAGCTCAGAGTATGACGTGTATCTGCCAGAGGTTCCTCGGCTACGGGAGCGTCTGGAGATCGCTCACTGGTTAGCAGCAGTGCATCAGGCTGAGGAGTCAGGCAGCAGTGCCCGTGGCCTCACTCTGGACGCTATGCGGCAGCTGATTGACCGAGCTGTGGGATTAACTTCTGACCCTGCAATAGAGCGTGCCATGGCTCGCCTGCAGGAGCTGCTCACTGTGTCTGAGCAGTGGGAGGAGAAAGCACAGGCGCTGCTCAAAGCCAGACCTCCAGAGACTGTGGAATCTCTGTCTGCCATTCTGAAAGAGATCGAGGCAGTTCCTACGTATCTGCCCAACTGCCTGTTGCTGCGAGACTCCATTAACAGAGCCACAGAGTGGCTGAAGGATGCTGATGCTTTGCAGttggGAGGGCGTGTCCCTGTGTTAGACACACTGTCAGACTTGGTGCTGAGGGCACGGGCGATTCCTGTGCAGCTGGAGCCACTGGAGAGGTTGGAGGCGCTCGTCTCTGAGGTGCAGGCATGGAAAGAGTCTGCATCCAAAACCTTTCTCCTGAAAAACTCCTCTTTCACCCTGCTGGAGGTGCTGTGTCCACGGTGTGAGGTGGGAAGCTCTCTCAAAAGGAAGATGAAGAAGACAAAGGGAGATGGAGTGTCATGTGGGAAAAAGAGAACAGGGAGACTGGACAATCTCAGTGATGTAGAGAAAGCCCTGTCAGAGAGTAAAGACTCAGCTTCTGCTatGACGACTCTTGCTGAGGTCCGTTTGAAGGAGCTGGAGTCCTTGGTGTCTCTCCGTGCAGCTAATGAATCTAAACTCCTCCCAGCAGCCGACTGTGGCGCactcaaagtgtgtgtgtgtcagaagcCTCCCATGGGTGCCATGCGGCAGTGCGAGCTGTGTCGTGATGCTTTCCACAGTGTATGTGTACGTGGGCAGGGGGACCCTTGTGAGTCTGAGCCGTGGTTGTGTCCTTTGTGTCGGCGTTCAACGAAACCAGCTTTAGACAGGATCTTGCCGCTGATGGCGTCTCTGCAGAGGATCCGTGTGCGTTTACCAGAAGGAGACGCGCTGCGTTACATGATTGAACGCACAGTGGACTGGCAGCGGCGAGCACGGGAGCTCATGGCCTCGTATAACCTTTCAACAACCGTTCAGGAACACCAGGGATGGCGCTGGGCAGGGGAAAGCAGTTCGAAGGGTCAGGATTGGAGCAAGTGCAGTCAGGAGCAGTCTGTCTTTTACATAGAGCAGCACTGCATCCCTCTGCAGGgtcTGAGTACAGAGCTGGAGGAGCTGATGGTGGAAGGATTATTGCTGCAGGTGTCACTGCCTGAGACTCAACAGCTGTATATGCTGCTACTAAATGGCCCCCCGGCCCAGTGCAGTCTACAGCATACACACCCAGCAAGTGAAAGCCCACAACACACACCCTACCACACTCAGGAACACACTTCACCACATAAAGAGCGAGACCTAGTGACCCCAGcagaaaagaaagcaaagcggcggatagagagagaagagatggGGCTGAAGATCGACGTGAGGGAGCGAGGCATCCCAAAAAGGAAGAAGCAGCGGATGAGAAGggagaagaggaaagagaggaaagcAGCATCGGTGTCTGCGTCACCCACTTACCTGTCTGATCTCTCCCAGTCGGACGACTCGGAGGAGGACATGATCCTCTGCCCAGCTGAGAGCTGCCTTCAGCCAGCAGgagatgagGTGTTCTGGGTGCAGTGTGACTGCTGTAACCAGTGGTTTCACATGATCTGTGTAGGCGTTTCTGAAAAGATAGCAGCCGATGAGGACTACATGTGTGTCACCTGCAGCGCACGTTAACGCAGGTCAGCACCAGAAATGAGACAGAGTGTAGGAGAGGAGCCGAAGCCTAGGAGGAGAACTACCAGTTCGTCTCCCCTTTTATCCCTTTTGTACAATCCTTTTCCCGGTTGTGTAACTGATTGTTCCCAACACCCTCTGACCTCTGATCTTTGTAACAACGGTgctatttcctctttttttggattttggttttgttgttctGAATGATGCTATTTGgtcattttttgtatttttacaacTTTTCTCCTTCTATTTGAACTATGTGTGGTTgtctaaaaatacaaatatgctAAATGAAAAGCGTTACATAGTAGAGTGTGGGGCACACAGCATGGGTTTCTGATCCGTTGCGTTGTCGACAATGAGAGCGAGGTCATTTGTTCAAAGCATGTGAAAAACCATACAGAAGGGTTTCTTATTTCTCGGGGACTTCTGCATGCTGAACACAGAACacaaaaaattgtttgtttgttttttaccaAATAtctacaataaacaaataagaaatgaaaactTGTTTTTGGAAAACCCACTGTTATGTACACATGCATCTGGGATAATATAATTTCtttgttatttctgttttcattttgtagattagttttatttatctgaGCAATAATGTCAGTAAGCATCTGGGGACTTGGAGTGTGTATGAACTGTGTGAACTGTGTGCTGCTTCTTTAGAGGTGATGGTTCATTGTACATGAAGTGTAAAGCATAGATGGTACAGTTTGGGTTGGTGATTAGTGATGTAGCAGCCAGAGAGACGTGTATAAAAGAAACTGCCACACAACTCACTTAGGCCATTTTGTGGGGTGGGAGGATGGAGTCGGCAGCCGGGTTTAAGCTTGTTTAAAATGTCCCAGTTTATAGTGTGGAATAAAAGCCCTTTTGTCTAATATCTTACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153354 lncRNA upstream 53906 9450562 ~ 9495730 (+) True G129849
TU153371 lncRNA upstream 78359 9462088 ~ 9471277 (+) False cebpb
TU153374 lncRNA upstream 78419 9462088 ~ 9471217 (+) False cebpb
TU153355 lncRNA upstream 95227 9453034 ~ 9454409 (+) True G129850
TU153327 lncRNA upstream 211686 9324708 ~ 9337950 (+) True G129831
TU153514 lncRNA downstream 27157 9600195 ~ 9602532 (+) True G129971
TU153546 lncRNA downstream 88208 9661246 ~ 9664685 (+) False LOC113532719
TU153547 lncRNA downstream 99029 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 142618 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 460312 10033350 ~ 10033565 (+) True G130231
XM_026927664.2 mRNA upstream 6357 9538833 ~ 9543279 (+) True tuba5
XM_026927548.2 mRNA upstream 12526 9521454 ~ 9537110 (+) True LOC113534601
XM_026922619.2 mRNA upstream 30378 9510939 ~ 9519258 (+) True adipor1b
XM_026922629.2 mRNA upstream 30378 9510939 ~ 9519258 (+) False adipor1b
XM_026929048.2 mRNA upstream 78357 9469630 ~ 9471279 (+) True cebpb
XM_026929718.2 mRNA downstream 1344 9574382 ~ 9582740 (+) True LOC113536035
XM_034306480.1 mRNA downstream 21752 9594790 ~ 9601084 (+) False LOC113526970
XM_034306479.1 mRNA downstream 21752 9594790 ~ 9599610 (+) True LOC113526970
XM_034306481.1 mRNA downstream 21752 9594790 ~ 9599610 (+) False LOC113526970
XM_034306483.1 mRNA downstream 21752 9594790 ~ 9599610 (+) False LOC113526970
TU152708 other upstream 1236980 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1577887 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2118639 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2122079 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2753560 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 784908 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 983480 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1297096 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2049264 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2049272 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile