RNA id: XM_026918254.2


Basic Information

Item Value
RNA id XM_026918254.2
length 2812
RNA type mRNA
GC content 0.42
exon number 17
gene id ahcyl1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12450275 ~ 12475750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATGGTTGTCCATCCTCAGGAACCTCCCCCTGTGGGAATGTCGTATTTATATACAATGGTAACACTATACAAGAGTCATTACAGGAGTCAGACCTAGTGGCAGGGAACATGGATGACAGTGACCATACACAGCAGATTCAGTTCGCCAACCAAGAGGATAAGCAGGAATTCAGCAAGTTCCCCACAAAGACGGGCCGCCGCTCACTGTCCCGCTCCATCTCCCAGTCCTCCACTGACAGCTACAGCTCTGCTGCCTCGTACACAGACAGCTCAGACGATGAGACATCTCCTCGAGAGAAAACTCAGGTCAACTCCAAAGGTAGCAGTGACTTCTGTGTTAAGAACATAAAACAGGCCGAGTTTGGCCGAAGGGAGATCGAGATTGCAGAGCAAGaTATGTCTGCTCTGATCTCATTGAGGAAGAGGGCTCAAGGAGAGAAGCCTCTTGCTGGGGCCAAAGTGGTCGGCTGCACCCACATCACCGCACAGACAGCAGTCCTGATTGAGACGTTGGTGGCTCTGGGTGCTCAATGTCGTTGGGCTGCATGTAACATCTACTCCACTCAGAATGAGGTGGCTGCTGCCCTTGCAGAAATGGGAGTGGCTGTTTTTGCCTGGAAAGGAGAGTCTGAGGATGATTTCTGGTGGTGCATTGATCGCTGTGTCAACACAGAAGGCTGGCAGGCAAACATGATCTTGGATGATGGTGGTGACCTCACACACTGGGTATATAAAAAGTACCCCAGTGTGTTTAAGAAGATTCAAGGAATTGTGGAGGAGAGCGTTACTGGAGTTCATAGACTCTACCAACTCTCTAAAGCTGGAAAACTGTGTGTCCCTGCCATGAACGTCAACGACTCTGTCACCAAGCAGAAATTTGACAACCTTTACTGCTGCAGGGAATCCATCTTGGATGGTCTTAAGAGAACCACAGATGTGATGTTTGGAGGGAAGCAGGTGGTAGTTTGTGGTTATGGCGAGGTGGGCAAGGGTTGCTGCTCTGCTCTGAAAGCTTTGGGAGCCATTGTGTGTGTAACGGAGATCGACCCTATCTGTGCTCTCCAGGCCTGCATGGATGGCTTTAAAGTCGTCAAGCTGAATGAAGTTGTGCGTCAAATGGACATGGTGATCACATGCACAGGGAATAAAAATGTTGTAACCCGAGAACAGCTGGATCGTATGAAGAACGGCTGCATTGTGTGTAATATGGGCCACTCTAATACAGAGATTGATGTGGCAAGTCTCAGGACCCCGGAGTTGACGTGGGAGAGAGTGCGCTCTCAGGTGGACCATGTCATCTGGCCTGATGGGAAAAGGGTCATCCTGCTGGCAGAAGGGCGCCTTCTGAACTTGAGCTGCTCCACCGTGCCCTCATTTGTGCTTTCCATCACAGCCACGACACAGgcactaGCACTGATAGAGCTGTACAATGCACCAGAGGGCCGCTACAGACAGGATGTTTACCTGCTGCCCAAAAAGATGGatgaATATGTGGCTAGTTTGCATTTGCCAAACTTTGATGCTCACCTTACGGAACTGTCAGATGAACAGGCCAAGTATATGGGCCTTAATAAGAACGGACCTTTTAAACCAAACTACTACAGATATTAGTTTGTATGAGTCACAAAGACCTTCATCAGGGATGAAGAGACCTGCATTATCAACGAGCCAagagatttattttctatttactgtccatttctaaaagaaaaactTGATTTTAAGTGAATGTTCTTATAGTGTCCTTAGACACCCAATAATCTATTGTCATACCTGTAGCTATACCTATAATTATACTCTTCTAGCACTTCATTAGAGTAACTTATGTATGGATTTGTTATCTTTAAATCATATTATAAGAGGACCATATCTTTTAAATTGTGCCATGTCTGGGTGGTGGTGAAGATTTTTGGGAGCATGTTTCGGGGAATAATCctatttttcactttgttgtcaTTTCAGTGCTTCTATTATATGTGTTATATGACTAATCTTTATGCTAATggaaaaccaaaaccaaaaaagtcCACACACTGAATTATGAACCCATTATTATCTCATAATTGTGAATCAGCTACCtgacaaaacacattttgtggATCAAATAATTACAGAGTCATCTTTAggtatagttttttttgtttttttttttgcaaataattGCTTCTCTAGCACGTCATctaatttattcttttaatatGCAAAcgatttacagtttttttttcctgaataatattttttaaaaacattacgTGAGAGATCTACAGAATGATTTCAGGCCTACTTTGTCTTTGCTATATATGCTGTGGTATGTATATTACTCCCAAGGGCTAGAGTGCTCAGATACTGTATACTCGTTATACACACCGGGAGTATCAGAACAGTACGGAGCCTGCATGACATTTATACAGCTTCCTccaactttttaaataatatttggtGGCCTTTGACAAACTTTTCCTCCCTAATTACATTAGCTCAGTATGAGTTacatataatagtaataatcaATTACTATTAGTTATAAGAGTCATAATCATTTAGGCTGTATATAGAAATCAGCAagcaattattttaatgttgattttttactttttaggtAAAGTTTATGAAATtttgcagcacacacacacacacacacaaacactaattaatatataaaatcaatgAAATGATCTTAAACAAATATCACTGTGATTGAGTAGGCCTGCATATTTATCTACAGTTCTTACATGTAACATGTTTCTcttatattaaataacattcCCTGCCTTGTTTATCATTAAATGTTTGTTCTGTTCCAAATCTGAA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155063 lncRNA upstream 229108 12228214 ~ 12228615 (+) False kcnq2a
TU155070 lncRNA upstream 231361 12226152 ~ 12226362 (+) True G131282
TU155067 lncRNA upstream 240509 12217004 ~ 12217214 (+) True G131279
TU154976 lncRNA upstream 462923 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 464684 11992819 ~ 11993039 (+) False foxp3a
XR_004578623.1 lncRNA downstream 44144 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 44144 12519894 ~ 12533258 (+) False LOC117597859
TU155155 lncRNA downstream 127767 12603517 ~ 12604634 (+) False rbm15
TU155458 lncRNA downstream 214417 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA downstream 224962 12700712 ~ 12701501 (+) True LOC117597872
XM_026926678.2 mRNA upstream 9739 12438112 ~ 12447984 (+) False nfyal
XM_026926693.2 mRNA upstream 9739 12438112 ~ 12447984 (+) False nfyal
XM_026926644.2 mRNA upstream 11016 12438112 ~ 12446707 (+) False nfyal
XM_026926686.2 mRNA upstream 11016 12438112 ~ 12446707 (+) False nfyal
XM_026926662.2 mRNA upstream 11016 12438184 ~ 12446707 (+) False nfyal
XM_026922840.2 mRNA downstream 2868 12478618 ~ 12509666 (+) True kcnc4
XM_026926809.2 mRNA downstream 111049 12586799 ~ 12597439 (+) True alx3
XM_034306621.1 mRNA downstream 123948 12599698 ~ 12604705 (+) True rbm15
XM_026927728.2 mRNA downstream 170939 12646689 ~ 12649107 (+) True prok1
XM_026921593.1 mRNA downstream 175475 12651225 ~ 12654683 (+) True LOC113531099
trnad-guc_1 other upstream 75653 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 747178 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 748291 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 586186 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 588300 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 893798 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1229506 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1846422 14322172 ~ 14323450 (+) True G132595

Expression Profile