RNA id: XM_026918328.2


Basic Information

Item Value
RNA id XM_026918328.2
length 3274
RNA type mRNA
GC content 0.47
exon number 15
gene id fnbp1l
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10743725 ~ 10790914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTGAGCTAACAGTTTGGcatttttccccccttcttCACCGGATTTCATGTCGTTACCGAGTCTCTACGGTGGTTGTgcaagtgtgtgagagtgtgtgcatgtgtgtatgtgcgtgtgtgtgtggagagagaaacGAGAGCGTTTAGTCGTGCACTGTTCCTAGCTTCACGCGCTCTCGGTTCCACGGCGGCGGAGGAGCGTCTCGCGCAGCTCGGAGCGGGGAAATAAAAGGCGGCTCAGTGGAGTGTGCGCTTGTAGCTTTtaccacacagacagaaatgaGTTGGGGAACGGATCTTTGGGACCAGTTTGAGAACCTCGACAAGCACACGCAATGGGGCATCGACTTCCTGGAGCGCTATGCAAAGTTTGTGAAGGAAAGGCTGGAGATAGAGCAAAACTATGCAAAACAGTTGCGGAGCCTGGTGAAGAAGTACTGCCCTAAGCGCTCCAAAGATGATGAGCCCAGGTTTACGTCATGCCTGTCATTTTACTCCATCTTGAATGAGCTGAATGACTACGCGGGGCAGCGAGAGGTCGTTGCCGAGGAGATGGGCCACAGGGTGTATGGTGAGCTGCTGAGATACTCGCAGGACCTGAAAGCTGAGAGGAAACACCACCTCCAGGAGGGACGGAAGACCCAGCAGTATTTGGAGCAGTGCTGGAAACAGATGGACAATAGCAAGAAGAAGTTTGAGCGGGAATGCAGAGAAGCGGAGAAATCCCAGATGCTCTTTGAGAGGTTAGACAACGACATCAATGCCACAAAGTCAGAGGTGGAGAAGGCCAAGTCCCAGCTGTATATGAGAACCCACATGGCAGATGAGAGTAAGAACGAGTATGCAGCTCAGCTGCAGAACTTCAACGCAGAACAGTGGAAGCACTTCAATGTGGCCATTCCACAGATCTTCAAGAATCTACAGGACATGGATGAGCGTCGGACGGTGAAACTGGGAGAGACGTACCGGAGCTTTGCCGAGGTGGAGAGGAAGGTCATCCCAATCATTTCCAAGTGCTTAGAGGGCATGGTGACCGCCGCCAAAAACGTCGATGAGCGCAAGGACTCATCAATCGTGGTAGAGTCATTTAAGTCTGGGTTCGAGCCACCAACTGACTTTCCCTTCGAGGATTTCAGTCAGAACATCCAGCGCACAGGGTCAGACGGCACCATCGGTACTCCCAAAAACGACCCAGGCAAACCTGACCCCAAACACTCAATGGGAAAATCCAAGAACAAACTCTGGTTGTTTGGGAAAAAGCCCAAGGCTCCAAACCTCGAGGATCTCAGCCACCTGCCTCCAGAACAGAGACGCAAAAAACTTCAGCAGAGGATTGACGAGCTCAGCAGAGAACTGCAGAAAGAAATGGACCAAAGAgatgcattaaataaaatgaaggatGTCTATGAGAAGAATCCTCAGATGGGTGACCCGGGGAGTCTCCAGCCCAAGATCTCTGAGACCATATGCAATATGGAGAAGCTGCGCTCTGAGATACACAAAAATGAGACATGGCTGGCAGAGGTGGAGGGGAAACAGAGTTCCCGTAGCGAACAGCGGCCCAGTTCAGATGTGAATCATCACGCACCTCATGGCAGAGAGAGTCCTGAAGGCAGCTACACAGATGATCCCAACCAGGAGCACCGGGCGCCTCCCCAACCCGACCACCATGAGTTTGACGATGAATTTGAAGATGATGATCCCCTTCCTGCAATTGGCCACTGCAAAGCACTCTACTCTTTTGATGGCTCTAATGAGGGCACATTAGTGATGAAGGAGGATGAGGTGCTGTATGTTATCGAGGAGGATAAAGGTGATGGCTGGACGCGTGTTCGTAAGCAGAGTGGTGAGGAGGGTTACGTTCCCACATCCTACGTGGAGATCACGCTGGAGAAGCACAGCAAAGGTTCCTGAGTGGATGAGTGGGGCTCTGTGGTGTTGGTGGAAGGGACACGCTGCTCTGGGTCTATTAGTAGGTAGTGCAGGGGGTTTCAGCTGGAAGAGACAGGAACAGAGATAAGCAAGCAGATTGCATGTTTGCATGCTGACTCTCATTTCCATTAACATCATTTCGATTCAGCAGAAGCCTATGACATAGATGTGGTAGAAGAGGGGAGAGGGATGGAATAGGGTGGGGGTGTAAAGTGAGGAATCAGCTGCATGGTAGAAAGAGTAGGAAACCCAAAGAGCTGATCTAACCTGATATATTTATCCTAAACTGTGCCTGACCCTAACATTTCGCCTTGTTGCACTCCATTCCAGCGCTGTCATAGGAATGTTTTCCTGTGTCATCCCTTTTGCTTGCCTTAACATGCATGATGTGAACATGTCACTCCCTCTCTCAGGGCTGACTTGTCAGCACCTGGTAGGATGTAACCACTTCTAATCTTTCATCACCCCATTTCTGTGATGTCTTGTTTATATCattattgcatatttttttcccattttgacTGTATTCATCAACAATAACACATCCATCATGAATGCTAAGTACAGCATGAATGAACCAGAGTAGACACAAGACTGGACCACAGCAGCCCTATCACCAATCTCCAACATAATTATAACCAACTGGCAGTTCTCTCAGTGTGTGCTGTGGATCAAAATACTGCCTTGGACCAATAGAGGGTGACGCATCATCATACAAAACGGACCAAAGCCTGGATCTGTGAGAAATGCAGTGAACACTCCAACCTTCCTTACAGCCAATCCTAACACCTTTATTCTCTTCCAGCTTTCAGTATCATGCTTGAAGAACTCGTTTTCCAATAAGTGTCTGCATTATCCAAAAGTGTCTGCGTTATccttttgtgtatgtttgtgaatgtgtcatgcatatattaaaacaatGTGTATGCATATGAATTATATGTATGCATATGTATATACCTAGTTAGGTTTTAATACTGATTTGTAAGTATTAACAACTTTTATTTCatactgaatgtgtttttaCCATGTCTTTTTATAGGGTTTTTAATCGTGCGAATGATTTTCGCTTCTACAACTCGTGCTGTTTTCTCTTTGTAATCAGTGCTTCTTTTAAAGTCTGAACACTTTTCTGCAGAGGACCCTGGTCTTAACCGATGCACTTTTTACCCTActtcatttaaatttgaattgagtgaatgaatgaatgatgttgGCTCTGACTGCTActtttgtataaatatattgtacAGTAAGAAACAGTGACCACTATCTACTGGGGTGTTTGATCAAGAGCAAgagcaaacaggaaataaatgcTAAAGTCCCTTTGTCTCAttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153994 lncRNA upstream 2321 10739685 ~ 10741404 (+) False abl2
TU154035 lncRNA upstream 47705 10695834 ~ 10696020 (+) False tmem51a
TU154034 lncRNA upstream 50311 10683129 ~ 10693414 (+) False tmem51a
TU153999 lncRNA upstream 194658 10546979 ~ 10549067 (+) True G130412
TU154002 lncRNA upstream 219026 10519440 ~ 10524699 (+) True G130415
TU154089 lncRNA downstream 71490 10862404 ~ 10862638 (+) True G130492
TU154224 lncRNA downstream 117440 10908354 ~ 10908717 (+) True G130608
TU154225 lncRNA downstream 118979 10909893 ~ 10910207 (+) True G130609
TU154227 lncRNA downstream 120250 10911164 ~ 10911375 (+) True G130611
TU154234 lncRNA downstream 125423 10916337 ~ 10916625 (+) True G130618
XM_026918011.2 mRNA upstream 2300 10706719 ~ 10741425 (+) True abl2
XM_034306634.1 mRNA upstream 2300 10717317 ~ 10741425 (+) False abl2
XM_026918024.2 mRNA upstream 2300 10729070 ~ 10741425 (+) False abl2
XM_026918019.2 mRNA upstream 2300 10730208 ~ 10741425 (+) False abl2
XM_026934268.2 mRNA upstream 46894 10683078 ~ 10696831 (+) True tmem51a
XM_034306370.1 mRNA downstream 79205 10870119 ~ 10874126 (+) False mrpl55
XM_026922991.2 mRNA downstream 79209 10870123 ~ 10874126 (+) False mrpl55
XM_026923001.2 mRNA downstream 79247 10870161 ~ 10874126 (+) True mrpl55
XM_026927752.2 mRNA downstream 84496 10875410 ~ 10883004 (+) True slc5a9
XM_026928700.2 mRNA downstream 92621 10883535 ~ 10894051 (+) True gclm
TU153993 other upstream 180164 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 385410 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 2431069 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 2771976 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 3312728 7424023 ~ 7430997 (+) True mrps36
TU154218 other downstream 79220 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 831388 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 831396 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 831396 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other downstream 831396 11622310 ~ 11633844 (+) False LOC113530800

Expression Profile