RNA id: XM_026918632.2


Basic Information

Item Value
RNA id XM_026918632.2
length 3621
RNA type mRNA
GC content 0.43
exon number 6
gene id slc16a1b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10513439 ~ 10541772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTAATGAAACTGAAGGAGAGGACAACTTACCAGCACTACCATGCCATGATTACAGCATGTCACTTCAGAATGGTCTGCAGTGAGACTTCAGTGTGACTGGGCGGAGCTAACCTCCTGAAACGTGACTGGGCAGgctgacagtgtgtgtgtgccgcccAGCTGACTGTGTTTTTGCCGCTCCTAATTGTTGTGTGCGAGTGGACGTGTAGCAATGCCTCCAGCGACAGGCGGTCCAGTGGGCTACACCCCTCCAGAAGGGGGCTGGGGTTGGGCCGTAGTAGTCGGCGCTTTCATCAGCATCGGCTTCTCCTATGCCTTCCCCAAGTCAATCACTGTGTTTTTCAAAGAGATCGAGGTGATCTTCAACGCCACCAGCAGCCAGGTCTCGTGGATCTCCTCCATCATGTTGGCCGTCATGTACGGAGGAGGACCAATCAGCAGCATCTTGGTGAACAAGTATGGCAGCCGACCAATCATCATCATCGGAGGCTGTCTGGCCGGCACGGGTTTGGTCTGCGCATCCTTCTGTAACACAGTGGAGGGACTGTACTTCTGTGTGGGAGTCATAGGAGGTCTTGGTTTGGCATTCAATCTGAATCCCGCTTTGACAATGATCGGGAAATACTTCTATAAGAAGCGTCCGATTGCTAACGGCATTGCCATGGCAGGCAGCCCCGTGTTCCTCTCCACACTGGCACCTCTGAACAGCTGGCTATATGATCAGTTTGGCTGGAGGGGGAGTTTTCTGATTCTGGGTGGTGCGCTGCTTAACTGCTGTGTGGCCGGCGCATTGATGCGACCCATCGGACCAAAACCACAGCCCAAACCTGCTGTAGAGGAGGGAGGAACAAAAAGGCATGAGAAGAAAACGGTGATGCAGACCATCAACAGCTTCATCGACCTGACGCTATTTAAGCATCGTGGTTTCTTGCTTTACCTCTTGGGCAATGTGATCATGTTTTTCGGGCTGTTTGCACCACTTGTCTTCCTCAGCAACTACGCAAAGAGCATCGGCATCTCCAAAGATAAGGCAGCCTTCCTGCTCTCCATGCTAGCCTTCACAGACATGGTGGCACGGCCATCTATGGGCCTGGTGGCTAACAGCCGCTGGGTTCGCCCACGcatacagtatttctttgcaGCAGCAGTGCTGTATAACGGCGTGTGTCACCTGTTGGCACCAATGTCCGTAGACTACCTGGGCTTCTCTATCTATGCAGTGTTTTTCGGGGTGGCGTTCGGCTGGCTCAGCTCCGTGCTCTTTGAGACGCTCATGGACCTGGTGGGGGCGCAGAGGTTCTCTAGTGCCGTGGGCCTCGTCACCATTGTGGAGTGTGGACCAGTGCTGCTCGGACCTCCCTTCCTGGGCAAACTGAACGACATCTACCATGACTACAAATACACGTACATTGGCTGCGGCATCGTCCTAGTCATAGCCAGCGTATTTCTCTTCGTCGGGATGGGCATTAACTACCGTCTGCTGGACCAAGAGAGGAAAGCAGAGGAGAGGAAAGCTGGGCTTGAAGAAAAGGAACAAGAGACTAACATAGACAATgccatgagagagaaagagaaggaagcaGAGAATGACGTTTCTACACCGCTCACAAAAGCAGATGTGGCCAAAATGGATGAGGACGCTGTGTAACGTGTAATCTGCACCACAACACGTGCTCACGTTTGCAACCTCTTTCATTAGTGACCGTCCACTATAAATGAGAGTGAGCAACAGACGGATGTACATTTTAGAATTGTAAAAAGGTTTAGTCAGCCATattgcatatacacacacacacacgcgctgaTCTCTCTATTCCTTCACACATTATCTGTAGTCCATGCTGGATTATAGCTGGCAGATCATTTCTCCTGCTTTGTCCTGTCTCTGCTTTTTCCACCAAAGAAAGTTCACACAAACACTCCAGTGTAGTGTTGGTGGTTGtggttgttttgggtttttttttttttcataagagGTAAAAATATAGGTTTTAATGAGCCACCATCCATCTAAGAGAAGATGGATCCATCTTGGAAAAACTGCCATTGTCATGTATATGCAAGTGCAAAACAATCAGCGCGTACAGAAAATACCAAACGGGTGCAGCTATAGATGTTTGGTGGCTCTCTCTGGAGCTCAATTTTGctttgtagtgtttgtgtgagacagagaacAGTATTCAGGATACATGTCAGTACAAAGTCAGCACATTTAGTCAAAGGATATTGTCCATTATTTTAATTCTGACTGCAGGTACTCAGTCCAGAGATTCTCACTCCTTTGGTTTGTGATATCAGCAGTCTTTTCTCACTAGTGTTCCTACATTTTCTGATGATTTCCAGTGATTACCAGTAATCAGAAACTGCACCAAATAGAATCACAACGTTAGTACACGCCTGAGACATAAATTCACACAAaggttgttttttaaaatgtagattttaaGAATGACCTCTTCACCttgtgcatgattttttttttttttttttttattttatttgttatagaATTCTGCTTAACAATGTGTAGATAGGACATTCAGACATTTAAAATTCTTCTTATGCATCTTTGTGTTtccatatacaaatataaataacatttgtcTGCTCTGTGTGCAAGGTGGTACTATTTCACTAATGCTTGTGCCTTCTGAAGTGCTTTACAAGTCAAGcccagtgtttttatttttgtttttttaacaaaacctaTTAGAATTCTaccattttaaccatttatagtatTCTCACTTTTTCTAGTAAGCCTAGTAAgattattaaatttcattttgatttcGAGCAATATTCTAGACAAAAGCACATATAGAGCCATATATCTGTTATAACATTTGAGAACTAACATGGTGAtgaatcagaataatttattaGTGGGTCTGTCATGCATAAGTCAAGTGTAGTTCTTCAAGAGTGTCATTATATTGTAATGTTGAGCTTACATGCGAGGTATAGTCTCAGCATCAGGATACCACATGAGGTTTACTACCAGTAAAACACCTTACACCTAAAACACCTTACTAGGGTGCACTAGGTCAGTGCACTCCCAAATGCCAACGTGATTAaggtgttgtttgtttgttttgttttgggttttttttttggtgtgtgtgcactttagCGTTCAGGATACATAGGCCATGATTATGAAATAAGGTTGTTGCACGCCACTGTTTCACAATGTAAACAGTGTGAAAAGAAAGGCTGAACAATATTAAACTTGCGTCAAGGATTTATAAATGTGTTGCTTTTTGCCTGCTTATACTTCACTACACTGTACTTCCAGATATTTCTTCATTCCAAACCTAAATGGAAGCatatcacacacaacattaatgTTCAGCATTAGAGTTTTTTAAATGGCAGTTGATCTATAGTCTCATCTTTGGGTGGGAAATGAAGGCATGTATATTGATGTACAAAAGAGAATGAGTGCATGGGAACACTCAGTACAGACTGGTTGTATGTTGACACTCTTTAGTTCCTTAATTTCTCTTGCTTTTTAGTAAATCTAATTTTGATAAAGTAACTTATATTATCTGGCTGTGATATTTTGTATGTTTGACCAGGAGTAGTGAACcaataaaccatttttaaaaattttaaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153848 lncRNA upstream 370637 10085561 ~ 10147134 (+) True G130285
TU153789 lncRNA upstream 484206 10033350 ~ 10033565 (+) True G130231
TU153572 lncRNA upstream 801903 9715656 ~ 9715868 (+) True G130021
TU153547 lncRNA upstream 845436 9672067 ~ 9672335 (+) True G129996
TU153546 lncRNA upstream 853086 9661246 ~ 9664685 (+) False LOC113532719
TU153999 lncRNA downstream 5207 10546979 ~ 10549067 (+) True G130412
TU154034 lncRNA downstream 141357 10683129 ~ 10693414 (+) False tmem51a
TU154035 lncRNA downstream 154062 10695834 ~ 10696020 (+) False tmem51a
TU153994 lncRNA downstream 197913 10739685 ~ 10741404 (+) False abl2
TU154050 lncRNA downstream 212028 10753800 ~ 10762869 (+) True G130459
XM_026923227.2 mRNA upstream 237837 10168385 ~ 10279934 (+) True si:ch211-254n4.3
XM_034306371.1 mRNA upstream 237837 10214445 ~ 10279934 (+) False si:ch211-254n4.3
XM_026927465.2 mRNA upstream 440250 10056229 ~ 10077521 (+) True mov10b.2
XM_026919256.2 mRNA upstream 486583 10013340 ~ 10031188 (+) True wnt2bb
XM_026922828.2 mRNA upstream 552675 9934292 ~ 9965096 (+) True cttnbp2nlb
XM_026918310.2 mRNA downstream 2147 10543919 ~ 10559899 (+) False zmynd12
XM_026918303.2 mRNA downstream 3054 10544826 ~ 10559899 (+) False zmynd12
XM_026915636.2 mRNA downstream 89709 10631481 ~ 10681263 (+) True kazna
XM_026915643.2 mRNA downstream 89710 10631482 ~ 10681252 (+) False kazna
XM_026915652.2 mRNA downstream 94898 10636670 ~ 10681267 (+) False kazna
TU153960 other upstream 159456 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 2205115 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 2546022 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 3086774 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 3090214 7424023 ~ 7427557 (+) False mrps36
TU153993 other downstream 14746 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 328362 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 1080530 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 1080538 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 1080538 11622310 ~ 11633844 (+) False LOC113530800

Expression Profile