RNA id: XM_026919256.2


Basic Information

Item Value
RNA id XM_026919256.2
length 2624
RNA type mRNA
GC content 0.48
exon number 6
gene id wnt2bb
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10013340 ~ 10031188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctccCACCCGTACAGCTCAGTGCTCCAGTatcatagagagagagagagagagagagagagcaggggaTAAGAGATACAGTACTGATGGCAGAGAGGAAGGTTCTCGCCAGCTGTTATTTGTTTCACGGCTGCAGGAAGGCCATCACACCTCGCAGGAACGGACACACACTTGGCCGGAGGACGGGAAGAGCGCGCGCGCTGCTGCCTGCACACGCGTCCTGCGCTCCACTGAGACCTTTATAACGATTTCAAAAAAAGGAGgtgggagaagaaaaaaaaagaaagtgcgagagacagagagagagagagagaggaaacgcTTCCTCCAGCGCTCTGGCTCGGATTATCTCTGGTGCATGTGCCAGCTGCTGGGGAATACTTTTAAATGGCGCGCGGCAAGAACCGATCAGAGAGTCAGCAGCCGAGCGCGTGGAGCGAGCAGCCGTGATCAACATTCCCACACGTCCTCACAGCGCAGGAAGCTCTCCCGCGGACGCTTTATTTGTGCCGAAGTGTTGCGCACTGGAGGACAGACTGAGCGATGTTTGCTTTTAGTAAGGGTCACGGCTCGCTCAGGATCCTCGGGGACTCCACCGCGCGCGCCACCGGCGCTTCCTCGCGCCTCTACTGCGCATttatcctcctcatcctcatcctcacacCCCGCGTGGACTCATCCTGGTGgTACATTGGCGCTCTGGGCGCGCGGGTAATATGTGATAACGTGCCAGGTCTGGTGAATAAGCAGAGACAGTTGTGTCAGAAGTATCCAGACGTAATGCAGTCGATCAGCGAGGGAGGAAAGGAGTGGATCCGTGAGTGTCAGCACCAGTTCAGACACCATCGCTGGAACTGCAGCACAATCGAGCGCGACCACACTGTCTTCGGCAGGGTCATGCAACGCAGCAGTCGGGAGGCCGCCTTTGTGTACGCAATCTCCTCGGCGGGTGTTGTGTACGCTATTACCCGTGCTTGCAGCCAGGGGGAGTTAAGGACGTGCAACTGCGACCCGCACAAGCGTGGCAAAGCAAGAGACGAACGAGGCGAGTTCGATTGGGGTGGCTGCAGCGACAATATTAACTACGGGATAAAGTTTGCTAAAGCCTTCGTAGACGCCAAAGAGCGGACAGTGAAGGATGCACGAGCACTTGTGAACCTTCATAACAATCGCTGTGGAAGAATGTCAGTGAAACGCTTTATGAAGCTAGAGTGTAAGTGTCATGGCGTCAGCGGCTCCTGCACCTTAAGGACTTGCTGGTTGGCGATGTCCGACTTCAGGAAGACCGGAGATTACCTCCGCAAAAAATACAATGGTGCCATTGAAGTCACCGTGAACCAAGATGGAGCGGGATTCACCGTGGCTCACAAGGACTTCCGGAACGCCACCAAAAATGATCTGGTGTACTTCGAGAACTCACCTGACTACTGCTTAATGGACAAAGCTGCAGGTTCTTTAGGCACAGCTGGTCGCATCTGCAACAAATCATCTCGAGGAACAGATGGCTGTGAGGTGATGTGCTGTGGGCGAGGCTACGATACAACACGTGTGAAGCGCATCACCAAGTGCGAATGTAAGTTTAAATGGTGCTGCGCTGTTGAGTGTAAAGACTGCGAAGAGGCTGTGGATATACACACCTGCAAAGCACCGAAACGAGCCGAGTGGCTGGACCAGACCTGAGACCTGGCCAAGTTCTGTCTTCCTTCGTCCTCCTCAAGATCTCCTGTGAACGATGGTATTCTGGGATATGATGTCCATCCTTCATGGCTCCTCTCCCTGATCCTTATTCCTTGTTGCATGGCTTTATTATAACTCTCTGTGAAAGCACtacaactaaaaaaaactgcatttcccATGAGCGCCTTGCACACTATGTCCAACCCGGCACATTACTCTgcctctctcttgctctttatTTTATGGTATTGAATTGGGCAGAGGACACTAAGAGTGTAAGAATGAGCTGCGTTGCAACTGTGAACTTTTTTGTTGGTGGTTTTTATGTATTGTTTTCTGTGAATTTCCAAAGATATGTTGTTCCTCAAGTAGTGTTTTGTGCTgcatttaaaatgctttaaggACTTTATAAAAGAACTCTAGGCCTCACTATAATACCACTTACTTGTTATTGAGAACACAACTAtgtgctttgtaccagtcatACCCCTATAACATTGTCTCGCTTTGACTGATAACGAATGTGAAAGGAGGCAGCAGCATAAAGAGAAGAAATGGCCTAGAGCTTTGCACACTTTCCAGATATGGCCAGATTTTGGACAGAAGACCTCAAAGGATTTTACAGAACTTTTTCTGAaagatgaagagacagagagagtgggagtttaaaaaaaaaggtctaaatATAAAGATGAGCCTGCACTAAGAACACTATCTaaccaaaaatgtaaatattaatgcataaaTTGCAATAAAAGGAAATGCATAATTATGAGCATTAACACGAAATATGTGGTCCAAAACATCCGTTCAGACTGAAAGTACTGGTTTGATTTATAGTGGAATTATGGTGTCACATAAATGCTGATGTTTTGGCTCTTCTGTATAACTTCTGTATACTGCAttgatatttaaacaaaagTTCACATAAAAAATATGAAGTATTAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00182 WNT2; wingless-type MMTV integration site family, member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153572 lncRNA upstream 297472 9715656 ~ 9715868 (+) True G130021
TU153547 lncRNA upstream 341005 9672067 ~ 9672335 (+) True G129996
TU153546 lncRNA upstream 348655 9661246 ~ 9664685 (+) False LOC113532719
TU153514 lncRNA upstream 410808 9600195 ~ 9602532 (+) True G129971
TU153374 lncRNA upstream 542123 9462088 ~ 9471217 (+) False cebpb
TU153789 lncRNA downstream 2162 10033350 ~ 10033565 (+) True G130231
TU153848 lncRNA downstream 54373 10085561 ~ 10147134 (+) True G130285
TU154002 lncRNA downstream 488252 10519440 ~ 10524699 (+) True G130415
TU153999 lncRNA downstream 515791 10546979 ~ 10549067 (+) True G130412
TU154034 lncRNA downstream 651941 10683129 ~ 10693414 (+) False tmem51a
XM_026922828.2 mRNA upstream 48244 9934292 ~ 9965096 (+) True cttnbp2nlb
XM_026924266.2 mRNA upstream 347647 9660815 ~ 9665693 (+) True LOC113532719
XM_026914347.2 mRNA upstream 354781 9651871 ~ 9658559 (+) True ddx20
XM_026913306.2 mRNA upstream 376317 9624300 ~ 9637023 (+) True rap1aa
XM_034306494.1 mRNA upstream 392384 9615604 ~ 9620956 (+) True LOC117597805
XM_026927465.2 mRNA downstream 25041 10056229 ~ 10077521 (+) True mov10b.2
XM_026923227.2 mRNA downstream 137197 10168385 ~ 10279934 (+) True si:ch211-254n4.3
XM_034306371.1 mRNA downstream 183257 10214445 ~ 10279934 (+) False si:ch211-254n4.3
XM_026918623.2 mRNA downstream 482251 10513439 ~ 10541772 (+) True slc16a1b
XM_034306548.1 mRNA downstream 482251 10513439 ~ 10541772 (+) False slc16a1b
TU152708 other upstream 1700684 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 2041591 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2582343 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2585783 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 3217264 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 326758 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 525330 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 838946 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 1591114 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 1591122 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile