RNA id: XM_026919551.2


Basic Information

Item Value
RNA id XM_026919551.2
length 2904
RNA type mRNA
GC content 0.46
exon number 7
gene id tspy
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11996043 ~ 12000770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGTTCGTATCAACATTTGGCTTCAGCCAAATGGCGAACGGAAGGACAAATTATAAACAAGTACGCGGAACTGGAAAACACGAGGCCTTGTTACATATTTAAGTAAGAGAATTTTACGCTTTCTTGCAGACGTAAACAGCAGTAGCGTCAGTGCAGGGAAGCAAACACTGTTTATAGTTAGCATACAAGCGAGCTAGGCCTCTAAACTCTAGGTATCTGGACAGAGGAGAAGTGCTATGCAAACgggttagctagctatctagctagttGGCTAACCTAGCTAATCAGTAAGATCACACATATCAGGGGAAAATCAGATCAGTAAGTTACCAAGCaataattttaaacacactaacaagTGTTTGCTGCTAACTATAACATGAATACAGCGTCGGACAGCAGTAATAAGCCGTCCGAATGTAACAGAAAGAGGAGCGCGAGCCCGCGGCAGCAGGAGGACTCCCCGCTGTCCAAACAGCTCAAAGTGGACGAGGAGGAAGCTGCAGAGAGCGATTCGCGTGAACGCGCCGAGAACGACGCGCTTCCATTAAAGCACAAAAATGGCGCATGTGAGAGTAGCAATGCTCCTGAGCTCTCTGAAAACAGAGTGCAAAATGCAAACGGGACAGAAAACGCCAGTGGGACTGAACggaaggatggagatggagagtcGTCTGAAGGCCAGAAGGCGCGCTCAGATTGCGCAACGATAGACGCAGCTGAAGCTCTCGCGAGCCTCACCGGTGCCGGGGACCAGCGTGCTGAAACGCCTTGTTCATCCAAACAAGCCCTCGGTGAAAACACGGTCAGTAAACAGAGCCGTGcagagctggagctggagctgagcACGCGAGCGGAGGACAGCTGCTCGGTATCCGCGCTGAGAGGTGTCGGTGGAGAGGCGCGGGTGCGCGCGCGCCGCgcagatgaggaagaggaggaggaggaggaggatgatgactCCCTCCCCGGGTCCTCCTTGACAGCCAGCTCGTCTGAtgacgacgacgatgatgatgatgatgatcaggaGCGCGAGGAGTGCGCCATCGTATCGGTGCAGATGGCCCCCGAGCTGCGGCGCTCCGTCGCGCTCCTGGCGCACGTGCAGATGCGGCTGGACGCACTGGAGAAGAAGGGCGCGCGCCTGCACCGGCGCCTCGAGCTCAGGCTGGGCCGTCAGCGGCGTCCTCACCTCGAGCAGCGCGCCGCCATCGCGCAGAGCATCCCGGGCTTCTGGCTCACCGCCCTTCTCAACCACCCACACTTGTCAGCACAGATCGATGAAAATGATGAAGATGCTCTCAGCTACATGATCAATTTGGAGATCGAGActttcaaaaacaacaaactTGGCTACCGGATTTGCTTTCATTTCCGTCGGAACCCCTTCTTTCAGAACAAAGTCATAGTAAAAGAGCTCCATCTTGGATTGGGAGGATCTCCAGTTTCTTTCTCAAACCCAATTGTTTGGCATCATGGACAGTCCTTGACAAGAAATGGAGAACCAAGGCGGAATTCACGCGGAGTTTACGAGAGTTTCTTCCACTGGTTCGATGACCATAGTAGTCCTGGGATGGATGAAATAGCACAGATCCTGAAGGATGACCTGTACAAAGACCCTCTTAGGTACTACCTGACACCATTGTGGGAGCCACGGGAAAATGGCAGCACATCCAAACCACCCCAGAACAGTAAtggagatgagtgtgtgatcatCTCGGATTCAGATGATGACCAGGAACTGGTCAGCCACGATCGACAACAAGAACAGGAAGATCAGGATGATGAGGACAATGAAGATGAAGGTCGAGTCACAGGTGCTGGTGACAGTGACCAAGAAGGAGTGGAATCTTCCACTGAGGAGAGGCAAGAAGAGGAAGTAGATATAGAGGAAGTGGATGAGGTCTGTCACTCAGCTAGCAGTGAGGTCAGAGAGCTGGgccaggaagaggaagaaggagatATTGAGGTtaatgaggatgaggaggaagaggaaaactAGCAACAGTATGCAGATAAAGATTAGAGTTATTCTTCAAGCAAATTATGGACTCATTAGGGCATTGTTATTGCAAGTAGCTGTGTCATGTCTGATAAGTACAGTATCTTGTCAGCTTTTAAAGAAACAGCAAAAATTGCTGGCTGTAATGCAAGATGACGTCATTAATATTTCGCTACAAAATACAGGATGTAGATAAAAAACTGGAAGGTTTAATATGAGATATGTTACATGGCAGTATAATTCATGTGTACAGGCTTTGTGTTCCCATTCCTAATCCAGactaacttttttattttcacatttttattccaAGCAACAGTAGAGGTTTTAACAGTGGTTACTGTTAAAATgcgtaattgttttttttaattgcatggACTATTTTCAGCTAGACAGACAACTACTATAACTCAGTGACGGCGCCCAGTTAAAACGTTCCTGTTGGCCCACAGcattgtttctgtttgtttgttttttttatgatgtgcTTCTGCAGCAGAGCCAGAAGTCTGgcttgctatttaaaaaaaagaaaaagaaaaaaaagagaacagaatCAGTTTTCTGCTATGCATAAGGATTTATATGACCAATACCACATAATCAAAACCCTTTAACCAGATTTGTTGGTTGTGagtttgatattttttaaaactttgtggTAATCATTCTTAAAGGGTGTGTTCTAAATAAATTTGAACTAGATGTACTTAGTTCTGAACCAAAACTGGACCACTCAGGGATGTTTATTACAGTGGATTTGTTTctttgatgtgtttttattggGTATAATAAGATTTATTACTTTGGTCTGAGTTGTTAATAGTTTAAATTTTTAGGTAAATTCCTTAAAATAATTATAGattgatatcttttttttttttttgtaagaataAG

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154976 lncRNA upstream 1243 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 3004 11992819 ~ 11993039 (+) False foxp3a
TU154974 lncRNA upstream 7618 11981765 ~ 11988425 (+) False foxp3a
TU154767 lncRNA upstream 278158 11716832 ~ 11717885 (+) True G131061
TU154744 lncRNA upstream 306369 11677903 ~ 11689674 (+) False uck2a
TU155067 lncRNA downstream 216234 12217004 ~ 12217214 (+) True G131279
TU155070 lncRNA downstream 225382 12226152 ~ 12226362 (+) True G131282
TU155063 lncRNA downstream 227444 12228214 ~ 12228615 (+) False kcnq2a
XR_004578623.1 lncRNA downstream 519124 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 519124 12519894 ~ 12533258 (+) False LOC117597859
XM_026919580.2 mRNA upstream 191 11981792 ~ 11995852 (+) True foxp3a
XM_026919590.2 mRNA upstream 191 11981792 ~ 11995852 (+) False foxp3a
XM_026919562.2 mRNA upstream 825 11979186 ~ 11995218 (+) False foxp3a
XM_034306721.1 mRNA upstream 825 11981792 ~ 11995218 (+) False foxp3a
XM_034306722.1 mRNA upstream 825 11981809 ~ 11995218 (+) False foxp3a
XM_026916956.2 mRNA downstream 9303 12010073 ~ 12033492 (+) True sema3ga
XM_034306684.1 mRNA downstream 75741 12076511 ~ 12096739 (+) True stk38a
XM_034306685.1 mRNA downstream 75859 12076629 ~ 12096739 (+) False stk38a
XM_026915790.2 mRNA downstream 102450 12103220 ~ 12187629 (+) True prex1
XM_034306617.1 mRNA downstream 129585 12130355 ~ 12187629 (+) False prex1
TU154763 other upstream 285498 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 286611 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 286611 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 288082 11705655 ~ 11707961 (+) False porcn
XR_003403367.2 other upstream 362199 11622310 ~ 11633844 (+) False LOC113530800
trnad-guc_1 other downstream 381229 12381999 ~ 12382070 (+) True trnad-guc_1
trnav-cac_9 other downstream 1061166 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 1063280 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 1368778 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1704486 13705256 ~ 13707550 (+) False LOC113527348

Expression Profile