RNA id: XM_034306811.1


Basic Information

Item Value
RNA id XM_034306811.1
length 3396
RNA type mRNA
GC content 0.44
exon number 14
gene id dpysl2a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16128186 ~ 16158486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTATATGAGCTATCAGCCTTACAGCTTGTGACTATGAGTGATCGTCTCCTTATTAAAGGGGCGAAGATTGTGAACGATGATCAGTCCTTCCATTCTGACATCTATATGGAGGATGGCGTTATTAAGCAAATTGGGGAGAATCTCATTGTTCCCGGTGGGGTGAAGACCATTGAAGCCCATGGCAGGATGCTGATCCCTGGTGGCATTGATGTGCACACCCGCTTCCAGATGCCCGACCGGGGCATGACAGCTGCAGACGATTTCTACCAGGGCACTCGTGCTGCTCTTGCTGGGGGCACCACTATGATCAttgaCCATGTGGTGCCAGAGCCAGGCGTTAGCCTTATTGCTGCATTTAACCAGTGGAGGGAATGGGCAGACAGCAAGTCATGCTGTGATTACTCGCTCCATGTGGACCTCACTGAGTGGCACAAGGGCATGCAGGAGGAGTTGGAGACCCTGGTGAAGGAGCATGGTGTCAACTCTTTCCTGGTGTATTTGGCATATAAGGATCTTTTCCAGATTAATGATTCCCAGATGTATGAGGTGTTCAGTGTAATCAGAGACCTGGGAGCCATCGCCCAAGTGCATGCTGAGAACGGGGATATCATTGCTGAGGAGCAGAAAAGAATCCTTCAGTTAGGCATCACTGGCCCAGAGGGTCATGTTCTCAGTCGTCCAGAAGAGGTGGAAGCTGAGGCGGTCAGTCGTGCAGTAACAGTGGCCAATCAAACCAATTGCCCTCTGTACATCACCAAGGTGATGAGCAAGAGTGCTGCTGATGTCATTGCTCAGGCCAGAAAAAAAGGTACAGTAGTGTATGGGGAACCTATCTCTGCTAGTCTGGGCACTGATGGCACTCACTACTGGAGCAAGAACTGGGCCAAGGCTGCTGCCTACGTGACATCTCCACCTTTGAGCCCGGATCCCACCACCCCCGACTATCTCAACTCTCTGCTCTCCTGTGGTGATCTGCAGGTAACTGGCAGTGCTCACTGTACATTTAACACCTCTCAGCGAGCTGTGGGCAAAGACAACTTCACCCTCATCCCAGAGGGTACCAATGGCACTGAGGAGAGGATGTCCATCATCTGGGACAAGTGTGTGGTGACTGGTAAGATGGATGAGAATCAGTTTGTGGCTGTGACCAGCACCAATGCGGCCAAGATTTTTAACCTGTACCCACGTAAGGGCCGTATCGCTGTGGGCTCTGATGCTGACTTGGTGCTATGGGACCCTGATGTCACTAAGATCATCTCTGCCAAGAGCCACAACCTGGCAGTTGAATATAATATCTTCGAGGGTGTGGAGGTGCGTGGTGCTCCCTTAGTGGTGATCAGTCAGGGTAAGATTGTTCTGGAGGATGGAAACCTCCACACTACTGAGGGATCAGGACGTTACATAAACCGCAAAACCTTCCCTGACTATGTTTACAAGAGGATAAAGGCTCGCAGTAGGCTTGCTGAGCTGCGTGGTGTCCCACGTGGCCTTTACGATGGTCCAGTGTGTGAGGTCACTGTGACACCTAAAGTAATGACCCCTGCGACCTCTAACAAGACTTCTCCAACCAAACCCGCCCCTCAACCCATTCGCAATCTGCATCAGTCTGGATTCAGTCTGTCTGGAGCTCAAATTGATGACAATGTTCCTCGCCGCACCACTCAGCGCATCGTAGCGCCCCCTGGTGGCAGGGCAAACATCACCAGCCTGGGTTAAAGAACACACTTCCCCAGTCCTGAAAGAATGGGGCCGGCAGGGACCCAAGGGCCCTTGCTTTGGTTATCACTCCTACCAATGAGACCTCTACCAGGCCCCTACAGTACAATATGACAACATCCTCAAATTTATCATCAGTAATTTACTCAAAAAGAAACACGGTCAAGGCGTTATTGTGTATTTTCCAACATTATCTTTAAActactatttgtttttttccttgtagGAAGAGTAATGTGAATCTAAGCTAAAcctgtattattttattgttacacGTAAATCATGTAAATGACAGAGAAAAATTCATCCTGTTCAGAATTATCCTTCAGTcactttcatttattcagcAAATATTGTTAACACATTGGTCTAgtgtttgggatatttttaagGAACTTGGGTAGTTAGGTGTGTTGTTCTGGTGTctttcatttcaaattggtgggtttttttgtgcTGCCAGCATAATTTACTTtggtattattttaaaaacagtaatgacatttatatttttggtCTTCAAGTTCATTATATCAGATTTAGGGTTAGACTATTTATGTCTTCTGAatactacacacatacagaaaagAACTATGCTTGgctgaataaaagaaaagaatccAGATCCCTTTGTatcactttttccccttttaaaTTTCCCCAGTCCCCCATCTCTAGTTGTCCATGAGTAAGGTATCCTGGCAACAGTCTTTAACCCTTGAAATAACGGTTTATTGGTTTCGACAGGCATGTTATGGTGCTATTTAATTGGCATTGCTGATGTGGAACGGGCCAGTCTGCTTGTCCAGCTATGACAGAGCCTGTAACACTTATCCACCAGTAGTCACCAAGCTTCCTCTCTCCTTTACATCCCTTTATCCTTCTGATCTTCACTGTATGgtcattttgtggtttcttagtGACCATAGTGATTGCATATCATCTGGCATGTGTAGAATTGATCCTGTGGAGATATGGTGTTGGTTCAGTTTACccagtaaaaatgtttttacttttaattctgctgttttctttaatgtCACATTCACTTGCCTGCTTGTATATTAGATGGTTCTTGACTGTCTGTGAGTATTGTTATAAAGACCTAAGaatttctcatgaaaaaaaattgtacagaGTTTATCTCTCTGCTTCATTCCATCCATTGTAGGAAATGTTACTGGTTAAAGGCTAACTAATCCACTAATGGTACCGAGCAGAGTCCTTTATCTGCAGTAGCATTAAAAGCTCATAGAGCTCATAAGTCTAAACAGACCTACATCAGTACTTAATATCCCTACACTAACACTTTTGTGCAGCATTACAACTCTTATAGTGATGGGAATGTAGAACTGTGGTGAAAGATGAGCAAGTTGGGTGCCAGTACCATACAAGTACAATGCTTCTATGATTTGCCCTTGAAGCATCTAAATTTACACTAGTTGTGATGTGTGGATTGCAGAGGAGAAAGAACATTTTAGTgtctttcttattttaatttttatgacTTGTTGCCCTTTGTCATGCATTGTTGAAGGTAAAAAAATTGTTGACTGTGTATGTTTTATAGGCTTCTGGGATCTGCAAAAGTTTTCTTCCTCACTCAGAAAGCTTTGCATTCCATATGTgtttaatgaaatgattttaagtattaaaaatgaaacaaaatttcaaaattt

Function

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157873 lncRNA upstream 94523 16042840 ~ 16043039 (+) True G133635
TU157862 lncRNA upstream 118744 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA upstream 118779 16011774 ~ 16018783 (+) False G133631
TU157835 lncRNA upstream 165453 15971860 ~ 15972109 (+) True G133617
XR_004578566.1 lncRNA upstream 496604 15637918 ~ 15640958 (+) False LOC117597798
TU157977 lncRNA downstream 6200 16164686 ~ 16170597 (+) True G133721
TU157979 lncRNA downstream 12699 16171185 ~ 16171500 (+) True G133722
TU157981 lncRNA downstream 13804 16172290 ~ 16172533 (+) True G133724
TU158107 lncRNA downstream 172094 16330580 ~ 16362249 (+) True G133842
TU158165 lncRNA downstream 280780 16439266 ~ 16440523 (+) True G133890
XM_026918883.2 mRNA upstream 12985 16110372 ~ 16124577 (+) True bnip3la
XM_034306612.1 mRNA upstream 52454 16072774 ~ 16085108 (+) True loxhd1a
XM_026916314.2 mRNA upstream 52454 16080125 ~ 16085108 (+) False loxhd1a
XM_026930126.2 mRNA upstream 77899 16054920 ~ 16059663 (+) True ptger4a
XM_026927175.2 mRNA upstream 95415 16034502 ~ 16042147 (+) True mrps27
XM_026910718.2 mRNA downstream 66128 16224614 ~ 16231225 (+) True tmem230b
XM_026910773.2 mRNA downstream 73615 16232101 ~ 16270087 (+) True igsf9b
XM_026910774.2 mRNA downstream 73615 16232101 ~ 16270087 (+) False igsf9b
XM_034306990.1 mRNA downstream 73615 16232101 ~ 16270087 (+) False igsf9b
XM_026910775.2 mRNA downstream 73615 16232101 ~ 16268600 (+) False igsf9b
TU157866 other upstream 118779 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 125958 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1157658 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1814112 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2430012 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 244262 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 421771 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 421967 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 421967 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 421967 16580453 ~ 16600585 (+) False mtmr3

Expression Profile