RNA id: XM_026922776.2


Basic Information

Item Value
RNA id XM_026922776.2
length 5392
RNA type mRNA
GC content 0.42
exon number 8
gene id elavl4
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11219551 ~ 11288918 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gGGTCGAGGgggagctagagagagagaggagtttaAACTAAGAGCTATGTTTTGGGACGGAGTAATCTGCTAGAGAGCAGTGTGTGGATCGGAGCGCattgtgagagtgagtgtgcgGGGGACTGATAAGGAAAGAAGCCCGCCAGACCGGCTGCTTGTTTTAATGTTCTGACTCTggggagataaaaaaaaaaatattgactcTTCAGTTGTGTGCCGTGAGCCAGGGCACAAGCTGCACATTTAACAGAGGTGCACCAAAAACAGGGCGTGAAAGCGGACAAAACACATCCAAGCAAAACAGTCCATTTAGAGGATTTTTTCCCtccctttctccttttttttaaatctgtttcctttttctttcgCTGGGACCGTTCCCCGTTTCCGGTAGAGACAGTGAAAAAGGAAGGGAGACTTCCACTGACGGACAGCCACTAAAGCAAGTACACAGAGGCGAGaggacaaaaaagaaacagtcGCTGATAACCAAGATGTTCGAAATCAGCCGAACCCTGAACGCCGCCTTGTTGAGCAATGAGGGATCGACAGAGACTCAGTGGCGTCAGGCAGACTTGCCGCAGCTCCAGGGCTGGGCTGACAAGGGACTGCTGACACAGCCAAAGATGATAATCAGTAACATGGAGCCTCAGGTGACGAATGGGCCGAATCCGGCCACAGCCAACGGGCCATCGAGCAACAACCGCAGTTGCCCGTCGCCCATGCAGACCAGCAGCTCCAACGACGACAGCAAGACCAACCTCATCGTCAACTACCTGCCCCAGAACATGACCCAGGAGGAGTTCCGCAGCCTTTTCGGCAGCATTGGCGAAATTGAGTCCTGCAAGCTGGTCCGCGACAAAATCACAGgacAGAGTCTTGGATATGGTTTTGTCAACTACATTGACCCAAAGGATGCAGAGAAAGCCATCAACACATTAAATGGACTCAGACTTCAGACCAAAACTATCAAGgTGTCATATGCACGGCCCAGCTCAGCCTCTATCCGTGATGCTAACCTGTACGTGAGTGGGCTGCCTAAGACCATGACCCAGAAAGAGCTGGAGCAACTTTTCTCCCAGTATGGACGAATTATCACCTCCCGTATCCTCGTCGACCAGGTCACAGGCCCCTCAGGTGGTTCGCGTGGCGTAGGCTTCATTCGCTTTGATAAGAGAATAGAGGCTGAGGAGGCCATCAAGGGCCTGAATGGACAGAAGCCCTCCGGAGCAGCTGAGCCCATCACAGTGAAATTTGCCAACAACCCGAGCCAAAAGACAAGCCAGGCCCTGCTCTCGCAGCTCTACCAGTCCCCCAACCGCCGCTATCCTGGGCCCCTGCACCACCAAGCCCAGAGGTTCAGGCTGGACAATTTGCTTAATATGGCCTATGGCGTTAAGAGGTTCTCTCCCATCACCATAGACAGCATGACCAGTCTAGTAGGGATGAACATTCCCGGGCACACCGGCACTGGCTGGTGCATCTTCGTCTACAACCTGTCTCCAGACTCAGACGAAAGTGTGCTGTGGCAGCTGTTTGGGCCGTTCGGTGCCGTCAACAATGTCAAGGTGATCCGAGACTTCAACACCAACAAGTGCAAAGGATTCGGCTTCGTCACCATGACGAACTACGACGAGGCGGCTATGGCTATCGCAAGTCTGAACGGGTACCGGCTGGGCGACCGCGTGCTGCAGGTCTCCTTCAAGACCAACAAGACCCACAAGTCCTGAGCTCCCTCCCCACTGTCGTGTAGCCCCGTCAAACACACCACTACTAACACCCACCTCAGCCCACACAGCTAGTCTACAACAGACAGGAACACAACCAATCCACCAACTAAACAGGACTGGATATGGCTTATAATATAACTTTGGACCTATAAGCCAATGTTGCCTAAGTATTACGaaattgaaaatggaaaatattaatGATTTGGAAGACCTGTAAATGGTACAGGCATTCTGTTGTATATCCTTTCGGTTCTAGTGGTTGTTCCTTTGATTTCTCCTCTCTGTAAACAGTAGCAAAACCAGACCGCCCTTATTTGAAAGAAGAGAATGCCTTTCTTCTGATTGTACTCTCTTGATTCAGGTTTTCCTTTTGTTCTCTTTTAAATCCGGATCCACTGTCGTTAGTATAACACCTCCCTGGGAAGAGACTGGGAGGGGGCTCTTTTTAACAAATCGgtgatcattcattcatttgttttggtGTATATTATTAAATCCCCCAAGTAAATTAACAGGGATGACACCATCCCTTTTCTCTAACGGAAAAGAAATTTctaacattgttttgttttgtactgCAAACAGAACACGTCTTTCCTCACGAGGGATTGGGAGATAGGGAGAGGGAAGGGATGGGTTTGCACTCCTGttgacaaaaacaacacacacacacacactgttgccaAAGAGAAGATCTCTTTGcttgaaaatgtgtttagaaaaaaaaatttaaaaataaagagaaagaagatctatttttataaataatgattaaaataataattattgaagAATTTTTACAAGAATCTGGatttgaaaaaaagagaaaaatattttgacTGGCTAATTAGGGGTTGGGGGAGGGGTCAGGTGCCACCTTGTCTTGTTCGTTCTGCCGTGGTACTTTTTAGGATCAAAGGTTGTTTGTTTTTCGGGGAGAACCAGATTGGCAATGGTTTTGTAGACGGATGGTTTTATCAAGGATTGCAAATTCAGGCAGGTAATTTTTCATAGCACGTAATTGTTCAACAGCGATCCCCTGTAGGCGAGGGATAGGGTCTTCCCAGGCCTGAGGCATCCTCACAGTCAAGAGCCCAAAGTAAGGCCACACATTGTCCACTCATTTTCTTTCCATCATCAGTCTTTGGGATATCAGtaatacatgcacacacttctCCATTTAGAAAACATACATTCTTATGGTTCTTTTTGCTCTGAGTTCGAAATATTGCATTCGAGACGTAATTCCTTTAGCGATCAACTGTAGGTGCTATATTACATGGGTCACATATCTTAAATATCCAAGTTTGTTGTTCTGTGTGCTATTtagagaacaaaaaagaaacttcAATGTTGGCATTAAATTGAGCTGCTGTTTTCGGTTTGTTTACTTCAATTGCTGGCCCCCATCTGGTTCACAACACTGATGCCAGATGAGCAAATCTGGGCCTTGTAAGAATCACTTAACAAGTTTTCTTTGGCTTGCTGACATATAGGTTACTTGCTGAGTGTACAGCGTTTGTcaaaattaaatgataattaGCTAGTTTTGTTAGTCTAGTATTTGTTTCCTCAAAGGATCTATTACAAATGTGTCTTTCTTTGTTGTGTACAAATAGATGATATATAGTCTACATTTGTTTTAcaatatctatatctatctgagttgtcactgttttttgtttgagcTTGTCTTTTTTCATATGAAAACTTTATGAAGTGATGGTTCAGTTACTTAGAAAACTCGTGAGGAATCCTGTTTAATATGTTGTCATGTcgcttgtggaaaaaaaagaaaaattggaCTCATTTTTTTTCGTTTACCGCCGCGGCAAaagaaacctaaaaaaaaatagcttcttggaaatatgtatttatttattgattgattgttttattgattacattatttatttatcttgattatttatttatttatttgtttgttgttatgttgtctgtgtttttgtgtgattcTGGTACAGGGAGGGGGTGTTTCTGAGCTAAAGGGAACAAACGACTAGGGGAGATGCTCTTCCATTAGTCCTGTGCACTGAGAAATTTTAGTACGTTTGTGCTTTGTACCAATATATcaaaattacaatataaaaaagtttaaaagtcaaaaactaaaaaaatgtcAAGAGGGTGAGGCTCTTCCCTTATTACTAGAAACAGTTACTCGCTATGCATAACCTAGTCAATAGTTAAATTTGCTATTGCTTTTTTCTTGTCTTGTTAAAcataaatctttaaatctttttcaATAAAGTTTAGTCTTAATAGAATGTTATAACAGTTGTTCTGGTTCAATATAACCTGTGATAAGTTTGTGTAGTTTTAAAAGCCGCTTCCCGCCCTCCCTCCACACACTACCGTTGCTTTGTGATCCAACTTTATGCAAAAATGTGGGTCTTAAACATAGTTTCTCATGGATTTGTATGGCATCCAATGTTTTAGGCTTAGCCGCCTTGATTTGATTAATTATATGGTATGTCAGTTGTTTGAGTATTATTCATTGCATTGGACCAATCAGTGGAgattaatgtaatttaacctTGATTTAAACTAATTCCACCATTTGCATATGACATCacaactccaaaaaaaaaaaaacattgacgCTGATTGTACTGGTTGAAGTGAAATAGCTATAAGAAGATGATATTTGATAGATGACACCCATTATATATTTTCTAAGATATAGTCTATTTTGAGAGGTAAATTTAGTGAACGGCTCTTTGAGAGTGCAGCATCAGCTCATGTTGAGATAGAACTTCTTTGAATGTTAGAGAACTTTAGCTATTTAGAAGCATTCGTACACAATTTATCATTCATCCATTTGTTCAGAAATCAATCCATCCTCTGCTCCATGTGCTGAGCGGTAGCACAGACCTCCTCAGACCCCACCGCAGGTGGGAGGTTAAATTATGCAACGACCCCGGTAGAATGTTGTTCTGATGTATGAACTAATTTCCTACGTCACTTCCTCCTCTTTGCTCATGGCATCACCCTCCATTAGTCTGTGTATAACTGGGAtcgagtgagtgagagtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtatacaCGTATGTATGTGGGGTGGGGGGGGTGAGGATGTTTGGAACATGGGGCCATGCCTCTGTGGTATGTGCCCAAATCGCTGTGGCTCACTTTCTCCCCCCGTAGCGCCTTATAGTGGCAGCCTGCCAATAGGAAACCAACAGCCAGTAGTGTAGGAGGGAAGGCCAAGTGAGGAACAAGGCtcttgtcatttttcattttctcctgaAGATGTGTTTGTTTACTATCTGAGAATCTATAAAtctttaaagacaaaaaagattaaaaaaaatgttcactggACCAAGCTGGTCTCTCCTATTTATGTTATTACTTAACTATcaattattgattattgttattatgattactattattcttattattcttattattaatcaaattaCTGCGATGAATGACTTCATGTTATCCTTGCTAGTTTAGGTCATTTCTGAAACTGGAaaacaaaatatggaaaaaaaaatcttgctgtaaatgtttttttctttttcataaacTGTTGTGTTTGAATTATTTGTACTTTTGAATGTTGGGACAATAAAATGAGGTGTTGAAA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402857.2 lncRNA upstream 271208 10944657 ~ 10948346 (+) True LOC113527270
TU154234 lncRNA upstream 302929 10916337 ~ 10916625 (+) True G130618
TU154227 lncRNA upstream 308179 10911164 ~ 10911375 (+) True G130611
TU154225 lncRNA upstream 309347 10909893 ~ 10910207 (+) True G130609
TU154224 lncRNA upstream 310837 10908354 ~ 10908717 (+) True G130608
XR_004578615.1 lncRNA downstream 66531 11355449 ~ 11359380 (+) True LOC117597850
TU154619 lncRNA downstream 260044 11548962 ~ 11552031 (+) True G130960
TU154744 lncRNA downstream 388985 11677903 ~ 11689674 (+) False uck2a
TU154767 lncRNA downstream 427914 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 692847 11981765 ~ 11988425 (+) False foxp3a
XM_026919639.2 mRNA upstream 317478 10895439 ~ 10902076 (+) True dnttip2
XM_026928700.2 mRNA upstream 325503 10883535 ~ 10894051 (+) True gclm
XM_026927752.2 mRNA upstream 336550 10875410 ~ 10883004 (+) True slc5a9
XM_026922991.2 mRNA upstream 345428 10870123 ~ 10874126 (+) False mrpl55
XM_026914924.2 mRNA downstream 147467 11436385 ~ 11447884 (+) False cdkn2c
XM_026914915.2 mRNA downstream 148534 11437452 ~ 11447884 (+) True cdkn2c
XM_026914932.2 mRNA downstream 153117 11442035 ~ 11447884 (+) False cdkn2c
XM_026927870.2 mRNA downstream 299906 11588824 ~ 11596613 (+) True si:ch211-198n5.11
XM_034306312.1 mRNA downstream 308863 11597781 ~ 11608557 (+) False LOC113538016
TU154218 other upstream 345537 10870134 ~ 10874017 (+) False mrpl55
TU153993 other upstream 655993 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 861239 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 2906898 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 3247805 7968235 ~ 7971749 (+) True LOC113526371
XR_003403321.2 other downstream 333384 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 333392 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 333392 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other downstream 333392 11622310 ~ 11633844 (+) False LOC113530800
TU154756 other downstream 416737 11705655 ~ 11709432 (+) False porcn

Expression Profile