RNA id: XM_026923227.2


Basic Information

Item Value
RNA id XM_026923227.2
length 1709
RNA type mRNA
GC content 0.47
exon number 5
gene id si:ch211-254n4.3
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10168385 ~ 10279934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCTCCTCCGGTACGAACGCGCGCGCCAGACACGATACCGTTACACCTCCTCCGCCTTATATCTCCTCTCCCAGAAAACACAGAGACGCCGCGGGCGCGCGCGCCAGGGCTCGTGGCTGAACGGCTCGCGCTCTGGATTGATTCCGATTGATTACGCACccgaaaagcaaaaaaaaacaaaacaaaagcgcTGGAGCGAAGTTTGGCGCGTCGCGCGCGCGGTGACATGGAGAGGTAGAGCAGGACGCGGCGCTGCCACGCAACTTTTAAATCCTGCTCTGACTTTTTTGGATGTTTCTGAACGGACGGTATTCAGTTTCGCCTTGATCTGGCTGGTGTATTGTAATCGCAGCACTGCTGGGTGAATTTCAGAGGGACTGGAGAGCGGGAAGCGCGCGGCGGAGTGCATGGCCCGTGACAGAGGATACGAGCGCGCGCGTTATGTCCGGTAATGAAACAGCAATGAGAGCGGACTTTTCCCTGGAATAAACGCACGCGCCGGGCCAACAGaatgCGGGAGCGGgatgtacagagtgtgtgtgtgtggctgctgcTGCTCACCCTGGCCCTGCTGTCTCTCTGGGGGCGTCTGGCTCTGGCCTCTTCACACCGCAACCATATAGTGCATGTGAAGGCTGGGACGTGTGAAGTAATTGCGGCCCATCGCTGCTGTAATAAGAACAAGATTGAAGAGAGATCTCAGACTGTCAAGTGCTCCTGCCTACCTGGACAGGTCGCCGGGACGACCAGAGCCGCTCCATCCTGCGTCGATGCATCTATAGTAGCCCAGAAGTGGTGGTGTCAGATGCAGCCGTGTCTGGATGGAGAGGAGTGTAAAGTTCTACCAGATCTCACAGGTTGGAGCTGCAGTACTGGCAACAAGGTTAAAACGACAAAGGTAACTCGGTAGTGGAATGCTCCAGTCAGAGGAAGTGGAAGTAGATGAATAGGAAACAGAAAGACTTGCAGAAACAACTTCACCAATGCTAAAATAATACGGGAACCAAAGCAGCAAGGTCTCGTGTTCCACTCCATTCATACCAATGAGGATCACCACACTACTCAGctctcctccatcctccataCTTGCAATCCGCTGTCCTGAGCGTTTGCTGCAAACCTCGTCAGCACAAAAACAGGAATGAAAGACTGTCTGCTCGCTGGAATTCGCCATGCATCTGGATTATATCTTATGGTAGAATGCTAATCGCAGAGACAACTCACTGCTAACATCGgaactgttttatttgttcagtTTCTTCTTCCCCCAGCTGCTTAGACGTTCTGTTGTGTTatggttttctttcttctgtctgtCGATGCTTCCTGTAACCTCACATTTTGAACCTGAAAtgaaaagtgacatttttgcTTTCCCTTCTAAAACCTTGTTTCTTTCTCAGCATCTTAACTTCGGAAACTAGAGCTGCAGTCCTGGACTTACTGACCATCTGTAGATTATTTTGTTCCTTttctaataaagaaataataagtAAACTTTTTGACgcaaaagacaaataaaacagtaGATGTTATGGTATAATtctgtaaaagtgtaaaagattACAAGTATAAGATTCTTAGAtccagaagaaataaaaaaaatactctaacaGTTTTAATATTGATGTTTTTAACCAGCCTGGTAACTGCTATTGAGTACATGTGTCAGTattatctaaaataaataaagctatttcaaaggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153848 lncRNA upstream 21251 10085561 ~ 10147134 (+) True G130285
TU153789 lncRNA upstream 134820 10033350 ~ 10033565 (+) True G130231
TU153572 lncRNA upstream 452517 9715656 ~ 9715868 (+) True G130021
TU153547 lncRNA upstream 496050 9672067 ~ 9672335 (+) True G129996
TU153546 lncRNA upstream 503700 9661246 ~ 9664685 (+) False LOC113532719
TU154002 lncRNA downstream 239506 10519440 ~ 10524699 (+) True G130415
TU153999 lncRNA downstream 267045 10546979 ~ 10549067 (+) True G130412
TU154034 lncRNA downstream 403195 10683129 ~ 10693414 (+) False tmem51a
TU154035 lncRNA downstream 415900 10695834 ~ 10696020 (+) False tmem51a
TU153994 lncRNA downstream 459751 10739685 ~ 10741404 (+) False abl2
XM_026927465.2 mRNA upstream 90864 10056229 ~ 10077521 (+) True mov10b.2
XM_026919256.2 mRNA upstream 137197 10013340 ~ 10031188 (+) True wnt2bb
XM_026922828.2 mRNA upstream 203289 9934292 ~ 9965096 (+) True cttnbp2nlb
XM_026924266.2 mRNA upstream 502692 9660815 ~ 9665693 (+) True LOC113532719
XM_026914347.2 mRNA upstream 509826 9651871 ~ 9658559 (+) True ddx20
XM_026918623.2 mRNA downstream 233505 10513439 ~ 10541772 (+) True slc16a1b
XM_034306548.1 mRNA downstream 233505 10513439 ~ 10541772 (+) False slc16a1b
XM_026918615.2 mRNA downstream 233507 10513441 ~ 10541772 (+) False slc16a1b
XM_026918632.2 mRNA downstream 237837 10517771 ~ 10541772 (+) False slc16a1b
XM_026918310.2 mRNA downstream 263985 10543919 ~ 10559899 (+) False zmynd12
TU152708 other upstream 1855729 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 2196636 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2737388 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2740828 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 3372309 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 78012 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 276584 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 590200 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 1342368 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 1342376 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile