RNA id: XM_026925017.2


Basic Information

Item Value
RNA id XM_026925017.2
length 5647
RNA type mRNA
GC content 0.44
exon number 16
gene id ercc6l2
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14154858 ~ 14171793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTATCAGCTGCTTGGCTGCCATTTTGCAGAAAACAGGGACATGGCAGGATGTTGAAAATAACAGGCCAGAGTTTTTGCAGTCACAGGTGCCATCAAAACAATCCAAAGTTAAGAAGATGAGCTGGACACTTGGGGCCATTTCAAAACAGTGGTTGTCCATGGTGTGAGGAAGGAGGAAGAATTGGCCCGTGTGAACAGAGGAAGATGTGAGATCGTCCTGACAACATTTGAGACGCTAAGACTCTGTCTAGATGAGTTCAACAGTCTTGACTGGGCCGCTGTCATTGTGGATGAAGTTCACAAGCTAAAGAATTTCAAATCTCAGATCACTCAGGCAATGAAAGGTCTGAAATGCAAAGTGCGTGTGGGACTGACTGGTACAATCTTGCAGAACAACCTGGAGGAACTCTGGTGTGTCATGGATTGGGCCAACCCTGGATGCCTCGGGTCACTCGGTAGTTTTAAGAACAGGTTCTCGGAACCTATTGAACAGGGACAGAAACACAGTGCAACCAAGAGATCACTGGCCGAGGGCCGCAAGGCCGTCCAGACTCTGGCTACACTTCTGTCCCGCTGGTTCCTCAGGAGAACCAAAGCACTCATTAGTGACCAGTTACCAAAGAAAGATGACAGGgtggTGTACTGTTCCCTGACGGATTTCCAGCAGGCAGTATACCGTGCTGTGCTGGACACGGATGATGTGAGGTTGCTGTTGCAGAGCTCACAGAAGTGTCCATGCAGCAGTGGACTCACCAGGAAAAAGTGCTGCTACAAGCTCAATTCAGACGGTGTCCCTGTCAGACACATGTACTTCAGTTATCTGGCTATACTGAGGAAGGTCTCCAATCATGTAGCCCTGCTGCAGTCTAAAGATGGAACCAGTAAAAAACAGGAGAAATATGTGACTGCTATCTGTGAGCAAGTCTTCAAGAAGTTTCCAGACTTCACAGAAAGATGCAAGCAGGCTGCATTTGAGGCCATGTCAGACCCCATCTACAGTGGAAAAATGAAGGTGCTGCAAAGGCTGCTTAATCACTTTATCACAAGGAAAGACAAAGTTctccttttttcactttccACAAAGCTCCTGGATGTTTTGGAGAGCTATTGCATGGCTGAGGGTCTGGAGTGCCGCAGGCTAGATGGAAGCACCAAGTCTAAAGATCGCATCCACATTGTCAAGGAATTCAACAGTGCCAATGATATTAACCTGTGCCTTGTGTCTACCATGGCTGGTGGTCTTGGACTTAATTTTGTTGGGGCTAATGTTGTTGTCCTGTTTGATCCAACGTGGAATCCAGCAAATGACCTTCAGGCTATAGACAGGGCATATCGCATTGGTCAGTGCAAGGATGTGAAAGTTTTTAGGCTTATCTCTTTGGGCACAGTAGAGGAGATCATCTATCTACGCCAGATTTACAAACAGCAGTTGCAGTCCTCAGTGAttggaaatgaaaatgcaagACGCTACTTTGAGGCAGTGCAAGGAATAGATGGCCAAACAGGAGAGTTATTTGGGATCAGGAACCTCTTCCGCCTCCAGACTGACGGAACTTGTCTTACACGCCGCATCCTGGAGAGGGAGGGCCATGTTGAGGTGGGGATCATGACAGCCAGTACACAGGCAACGGATGAGAGGGTGCAAGAGCTGCAGGATCCAGTGTGTGTATCGGCAGATCTCTCCACACAACAGGATAATAGACCAGCAGCAGCATATGGTACCAGTGCCAGGTTCTCTAATGCTGAAGTTCTGGACTTTAGCAGCACTAGTGAGGATGAGGATCCTTGCGGCTCTAGATCAAAAGCCACATACCCAAAAGCAGGAGAGGAGTTTGGACCCAGCACTGGCTCTGCTGCAAATATGAATCTATCTGCTCTGCTGATGAAACATATGACTAGTGGGATACAAAGGAGCTCAGAGAGCAGTGAAGACAGCCAGTCTGATACAGACTCGAAGGGCTTGAACCTAGAGGAGACCAAGGTAGCTAAGGGGAAAACAGAATGGTTCCTTTCTAGTGACTCAGAGGAAGAGAGGACCGAAGCAAAAAAGGTCTGTGACCATGTCTGCATGGAGGAGTCAGAAGACCTAGAAATTTTTCCCAACCACTATACTAAAGCACAACAGAGAGATAGAGGCAATACTAACAAGGAACAGAGGCCGGATGGGGCAGTATTGGCAGTACAGAGACAGAGACGTACTGAGGAGGTTGAGAGTTTTGACTCATCAGAAGATGAAGCTCCAGTGAGAAGGGTGAAGTTTAAGAAAAGTCTTCGATGCCCGTTTAGTGCTCAGAATTCAGCTCAAAAATCAGTTCAGTTCACAGGTTTAAAATGCCCGACAACACATTCCCGAAAGTCACAAATCATAGAGGGTACCAGCACCGGCACCATAGACACATTATtagTTGGGCTGCAGGAAGTGAGCTATACCCACTCCAATCAGAAATTGGTCGGCTCGAGCAGGGCAGAGAACCGCCTCAGTCGTGCTGCTTTACAGGATGTGTTTGAACTGAGCAAGCACTCTCAGCTCCCAGCAAACCATCTCTATGACATATCTGAGACCCAGTCTGGAATCCCCCAGTTATCTGAGCTCACAAATGGTGGAGAGGAAGATATGCCAGAAGGTCATGACAAGACTTGTCTGAAACATCAGGTCACCCACACCATAGAAACTTCCCTCCATACCAAAACTGCAACTATTAGTGTTGGCAAGACGCCCGCTGCTGTCCGCATgCAGCAGCTGGAAGAAATGGCAAAGTTCTTCAGAGCGACGTCTGTGCAAGAGTTTGCAGAAGAGCTTGTGAAGAGCAGCTCAGCACAGCGACTGAGCAAGCTGTGTGAGTTCTATAGCCACAGCAGCCCTGAGCTTACTGACAGTATCCAAAAGACCTTTCCTGAACCTGTGACTGAGCTGAAACCAAGTACTTCACCTCTCACTGCTAAGTGCAGAATGTCTCGACAAAGGCCTACCTCAAAAAGAACCCTCTTAAACTCAGTTCAGAAACCTCAGGATGAAGCAGAAACAGGAGCCTcacaaaagaagagaagaacTAAGGCACAAAGTGCTAAAGATGCCCATCATCACTGTGTTAGTCAGGTTGAGCTTAAAAATGACTGTATGTCTTTGCCAGACTCAAGACGAAGTCCAAGAGAGAAATCTTTTAGAACGTCTACAGACATTCATCCTCACTCCCAAAAAAATGCTAATCCACGCAGTTCTTCCACAACTACTTCCACTACTGAATTGTCACCTTTCTCTAGAGATGACCAAGCAGACCAAAACTCAAACCCAACCCTTATTAGTGACCTCATAGGTGACACATCCATTCTAGATGACCTCTTCAAGCAAAACAGAAGCGCGGACCGGCCAAAGCCAGCAACAGCACCCATTCCATCACCCACTGAGAGGACAAAGAACAGAAGTAAAGACTTCTGGGACATTTTGAATGAGGGGAACGAGGAGAGCATCAATAAGCTAACAGATCTATCTCAGCTGGAGAAGGTTTGCAggagtgttaatgtgtgtgcaaAGTCCAGAAGTGAAAGCCAGCTTGAAAGCTCTCAGCTCTGGAAGAAGAATGAGAAATTCCTTTGGAAAAGATAGAAGAAGTTTAGAAgctttttttgtgaaatgtgaaattacaaagaATGGTTTACaaaatattctcatttttatacagtaatgttttatttaagtgCATTTGGTTTTTAtctgattattaattattgtagAACTGTTACTAGTCCATACTAGTGTTTTAACTGATGTTTAAGACATTTTTACCTGCTTTTTCTGAATCAGTGCTGTTAATGTGTGAGAATACACTACAGCCCATTTGAATGGTATGAaaaatctgtttctgtctctgttttcagTCTGGAATTATGTGCGAAGCCTCTGGAATTGTTATATTGCTATTCAAATACAAGCGTGATCAAAACATACACCCCAAGTTGGGCTTTAAATTATGGAAGCCGATGCTAGCAGAGTCTCTGATTCCAAAGTCTCAGAGAAAGTAGTGTTTTTGGTGTAGTAGTTTCAACTCTCTGCTTATTGTTTTACCTTTTTAAGCACTGCTTAGCTTttgctgcttttctctcagtgCATAACActtgcttttttcttcttttttctttttctttttttatccacaTCTAACCTTCACTTGAGCAGAAGATCCCCACAACGTCATGGTAGCATGAATAGTGTCTTAAGTGTCAAAGGAATAGTGTGCTTAAGGTCATTACCATAGATGGATTCATCTATACGTGCACAAGCCCCCATTTGAACAGcctaaataataatcattaatgacTGATGACTCATGTTATATGAATCAAACCTCCCTCTACAACAGCCACACACCACCACAGCCAATGTgaaaaagtttattaaaaatggcGGGCAGCCATGTGGCTCTTACAGTGTGGCTCGGGTCCAGCCTGACTGAACTTGATATTGTgctatgtgtgtgatggtgtttcTGGGAATTATTCCGTTACCACACTGTAAGGGAGTGCTGCAAAAAAGTAAGTTAGACTTGACTGGGATAAAGACCCTTTTTGCACTGTTTTGCTTTGTATATTTGTCCATGCTGGGTGGGGACGGactgagtgtatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtttagCGACACAGCTGTGCCTGATGTTAGGCTGAAGTAAGCAAAGAGCCTGAGGAGGAGGACGagtgttggtttttttttcgtCTTTTTTCATCTCCCAACATGAAATGGGAAAGTGTTGATAGCTATCAATAAAAAGGAGACTAGCGCATGCTGTGACGCGATTCCCCGACCACACAATTTGAGTCTCTGTTTCAAACACACCTGTTCACGAGGCAGCTCACAAACTGGAGAACATGCGTGCTATTGtgcaaaacacagaaacatcaGAATCTTGGCTATCAAGAGGTTTCATAAAGAAGTCACCATGGCAGAGTTAACCACTGATTTCCTGATGAACTCGTTTACTTCCTATAAATGAGGAATTGACATAAGGAGAAAGTTGATAAATTGTTACATCCAATATTTCTTCTGGAACTAAACTTTTCCAGGGCCAGCATTGGTGCCACGGTAATTTGTGGCAGGATGTTTCTCAAAAGATAGTTTCCAGGGGTTGGATATATAAAATTGCCTTACACTTAAAGATAATTTTACAGTGAGACAAAAAGAAACTTGTCTTTTCATCACCATGAAGAAGGGCTGATTGTCATGAGTCTGTAGTTGTTTCTACAGGGtgtttgaaaagtcaggaaccactgggaatatgttgagcaaaatccgCGAAAACATGATCTAGCAGCTGAGAAAATGCATAGAGCGTAAGGGTGAACATGTAGcgcatatgttgtaaataataaatacaagattaagtaagtatgtaagtctcattggttcctgacttttcagacactctACACTTTTAAATCTACTTGTTTAGTGTTTTCTATTGTTTCCCTGTTTCAGAATGTATTAAAAGAGTGTATAAGTTATTTCTGAATGAATTGTTTgagttttgtattttaaatttgtgATTAATAATGTATTCTTTGGGTGAAGACAATGCCAGAGGGAATCTTGTAATAGATAATAAAGGTCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156373 lncRNA upstream 36621 14116975 ~ 14120415 (+) True G132361
TU156411 lncRNA upstream 69155 14085652 ~ 14087881 (+) True G132391
TU156342 lncRNA upstream 134387 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA upstream 143415 14010503 ~ 14013621 (+) True G132357
TU156341 lncRNA upstream 208228 13891210 ~ 13948808 (+) False dock8
TU156430 lncRNA downstream 61235 14233028 ~ 14234254 (+) True G132405
TU156445 lncRNA downstream 73783 14245576 ~ 14246134 (+) True G132420
TU156449 lncRNA downstream 77329 14249122 ~ 14249718 (+) False G132424
TU156452 lncRNA downstream 77329 14249122 ~ 14249815 (+) True G132424
TU156615 lncRNA downstream 88486 14260279 ~ 14260655 (+) True G132569
XM_026914857.2 mRNA upstream 134349 13949937 ~ 14022687 (+) True aopep
XM_026913277.2 mRNA upstream 208756 13890404 ~ 13948280 (+) True dock8
XM_026913286.2 mRNA upstream 210066 13902945 ~ 13946970 (+) False dock8
XM_026913293.2 mRNA upstream 210066 13906561 ~ 13946970 (+) False dock8
XM_026925635.2 mRNA upstream 271369 13879662 ~ 13885667 (+) True lrif1
XM_026912832.2 mRNA downstream 27910 14199703 ~ 14232129 (+) False slc20a2
XM_026912799.2 mRNA downstream 27912 14199705 ~ 14232129 (+) False slc20a2
XM_034306457.1 mRNA downstream 28320 14200113 ~ 14232129 (+) False slc20a2
XM_026912823.2 mRNA downstream 32989 14204782 ~ 14232129 (+) False slc20a2
XM_026912805.2 mRNA downstream 33059 14204852 ~ 14232129 (+) True slc20a2
TU156117 other upstream 449486 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 787417 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 1092914 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 1095028 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1774966 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 150379 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 808040 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 1830268 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1830268 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2230955 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile