RNA id: XM_026925019.2


Basic Information

Item Value
RNA id XM_026925019.2
length 4106
RNA type mRNA
GC content 0.46
exon number 22
gene id sorbs3
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24505197 ~ 24559028 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGAACTTCATCTCACAGTGAAGTTCCAGTTACGTTCCAGCTTATTTTCCAGTTGCTCATCTTTCAAgaccctgtACAGTGAATCTGAGTTATTCATAAAAGAAAAGGACTGGAAACCCCACAGATGACATGCAGCCTCAGAGGACGGTGGTATATGACCATCTCAATGGCTCACAGATCGTTTTCTCAGATGAAAGTCGACCAGGAAACGCTCTGTCCCCGGACATGACCCAGGAAGTAGTCGTGATCTCACCTGGTCTCCCTGCACCTCCTCTGACCCCCTACTATAGGAGTGCTACTGCTTTGGCTCCTCAACACAATGTTGCAGAGGTAAATGGAGGTGCAGTTCCTACCCCCAGTTTCGGATCCTACTACGGCCCAGACCAATCACATGATCGATTACCTAATGGTGGGCCAAGCTCCGCTACTCTGCCTCGCACTTCCATCACCAGAGAGGAGAGGCTCATCAAATTCTCTGGGATTGGCCCTGTGGACGAATCAGGCATGCCAATCGCATCCCGATCTAGTGTGAACAAACCTAAGGACTGGTACAGGAGCATGTTTCGACAGATCCACAAGAAACCAGAggagCCAGAAGGTGACTGGCAAGAAAGGAGGCTGAATGCCACTCCACCTGTAGAGTCGACTCAGGAGGACGGACACGGACCTGGAAAAGACCCCTTCACCCTCACGCAGCATGGAGCGCTGCCTGACTGGGCTGACCTGGGCGATGTAATAAAGATTCCAGAGCCGAAGAGCATTTTCGACTTTGAGCCAGGACAAGGAGGCACAGCGGAGGAACGTGTGCAGtCACCAAGACAACCGCCAGTGCACTACCCTCCTGAGAGAGCCCACTCTCCTTCCATAGAGgcCACTCTAGTGTCGGAGCTAAACCGCTTCGAGGCAGAGCTGGACTCAGACATCCGTGGCCTGGAGAGGAAGCTGTCTctgaagcagcagcagccaCAGCGGCGAGGCAGGGGTGAGGGTGAAAGGAACGACACTACCGGAGCAGGGACATCTGGGAAAGGACTAGACTAcagCTACCTGATTGGAGAAAAGCACCTTGGGACGAAAGATAGAGGTAGTGCCCCTCCAAGCCATCCCACAAACCCTTGCACCGGCGTTCAGCAAGATATAGCGCCTAGCATCACACATGCTAATGACAGAACAGCGTGTGTGTCTGCAGACATGGACTTTCTACctaagagagaggagaaaaagATGAAAGCAGCGCGAGCCAAATTTGATTTCCAAGCCCAGTCACCCAAGGAGCTGACCTTGCAGAAAGGTGATGTGGTGTATATTCACCGCCAGGTTGATGCCAACTGGTATGAAGGAGAGCATCATGGGAGAGCAGGGATCTTTCCTACTAGCTACGttgagATAATTCCTCCGACAGAGAAGCCAGTGCCGATAAAGTCTCCCAGCGTACAGGTGCTGGAGTACGGCGAGGCTGTGGCTCTGTTCAACTTCAATGCTGACCTGCCGGTGGAGCTATCCTTCAGGAAGGGCGAGGTGATATCCATAACACGACGGGTGGATGATCACTGGTTGGAGGGTCGGATCCCAGGCACTGTCCGCAGCGGCATTTTCCCCGCCAACTACGTGCAGGTCAACAAAATGCCCCGCACCAAAACCAGTGATGACCTTTCACCCTGCCCACTCTCACCCCTCTCCCCTTCCCCTCACTGCACTCAGGCTCCGCTTTCACCTCACACACGCACCACCCAATCACGCTCACCCCTCTCACCCACACAGCCTGCCTACACCAAACAGCCGTCCAATCACTTTGTGTACTCGCCTGGCCCCGCCTCACCCACTCCACCCAACAGCCACAGGAGTTTCTCACCTTCAGCATGCAGCTCGTTGGACAGAGAAGCGAGATTCCCTGTTTCACCATCCAGTCATGTCCTGGCGTCTCCACAGGGCCCGGGACTGGCAGCGAACATGAACCCGCGACCTTCATATTTTTATCAGGATGGAGCCAGGACACACTCTCCTCAGTCTTACACACATGTAAAAACTCCACCATCAGCAGCTTCTCCAGTCAACAGCGGCACTACAGTCATACCACGACAGCCATATAAGGCAGTTTACAACTACAAGCCCCAGAATGGAGACGAGCTGGAGCTGAGAGAGGGAGACATTGTTCAGGTGATGGAGAAGTGTGATGACGGCTGGTTTGTAGGTACGTCTGAGAGGACTCATGCTTTTGGAACGTTTCCTGGCAACTATGTGGCACCTGTGTGAACGTGAACAAATGTTTTGGCACATTCACTACTTCTGCAGTCTCACTCACTAATTCGAAGAGAATTTtaacgtatacacacacacatatatatacacaataaatcTTCAatctcttcatcatcatctctcacTTTTCAGCTCCTGAACTGGTTTGCATGCACACTCTGTTCACATTTTgagcacttgtgtgtgtttttggctgtgtgtgtgtctgtttgttttcaCAAGCACTCCCTGGATGTGGTGGCAATGGCAAAGACACTGTGTTTGGAACAGTCAAGGCAACTCGCTTGTTTTTACAGCTACCAGTGACTGATTTAAGAGGTGGCCATGGATATGGTTTGGACTGGACTGCTGCCATagagaacagagacagagacacgcTCCTTATCGTCCACATGCTTATTTTGCAGCACATCCTGTGTTTGACATTTTTGTGTAAAGATTTCCTCCGTCCTGCATTTCAGATTTGTAACAGCGCAGCTCCGTGAACACTCCATGAGGACACACATCTGGATGGATGAACTTTCTCAATTATCATGATCATCACAAAtattagtggtttttttttttgctggctTGGCTGAACTCAATTTGATATTAACAACACAACCATGCAAATCCTTGCCTGCTAGGGCTTCATCTATGTGTAGTATATGTTAGTGCTGTATCTGTTAATCTATTGCTCGAGACACCATTGAAGGATCAACTCACTCGGCAGCATTCTGGGGATTATCGTAATATTTCTGAGGAAGTAACTCATGCAGAACTGGCTTCAGTATGTACGTATTATAAATCTATAGCTCAAACATGTCTGTAGTGGATTAGCTAGACTTTGACAGTTCAGGGCTGTATGTGAGAATAGCTAAATATGATTGCCTACATAACAAAAACCTATTACCGAAAACTTGTGTTATAGATCATTATTCTGTGTTGAGTAATACATTTCCTGACATCTAATATGCTATTTAGGAACATGACCAATCCTAGACGTGCTGTGCATCATGAAGGGTATGGTTCTGTCATTGAGATCGGGCGATGGAAAGGAAGTCTAGTGTCATTTCAGATTGGCTCCTTGCTGGAACATTCTTTCTCTATCAACATGATCTGGTGAAAAATTCACAACAATTCGAAAGAGTGAGGTTGATGTGGTTGGGTTTTGTTGGAGTTAAGGTATAAACCTTAACCATTGTAACTTTTTACACAAACTGAGTCATTTGGGTTGTCTCTTGGAAAGCCATTGCAGTTTTCATTGACCACACTCAAATTCATTCCTAAAAAAGTTTTCTGAAGTTTAACATGATATTAAACCCTGTTGTGAAGTGATCCTCATTTGGAATTGTAATACTAAAGTAAAGTCTACCACATATCGGCCACTATCTTCCTTTTTGAGCATGAAAATGCACTTGGAAAGATGAAGTAAGATGGTGACCAAAGtataaagaaaaaggaagtgtTTTGATCAGATGATGTATGTACAGTAATTCACAAATTATGTTATCTCATGATCCCTGTCACTGTCAATTCCAACTAAAAGCAACTTCTTAATAAGCATTCCTTACATTCGTAGTCATGCATCGACAGAGGAAAACTGACTTGACCACAGGTTTTTATGGGATGATTAGGTTACAATAGAACAGTGAATGCTTGTATGTGGTTGTATTGTGTAGGATACTACTTTCTAACTCGAgtattatttccattttttttttttttgttttctgagaCTGTACAGATATTAACAGTTatcaaactaaaaatataatatatttttactgaTTGCACAGTGTATTTCAGTAGCTATGGTACTCACAGATTTTGATAACCATCAAATAAATGCATCCtgtgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163604 lncRNA upstream 4541 24502086 ~ 24502371 (+) True G138535
TU163307 lncRNA upstream 143151 24362949 ~ 24363761 (+) True G138280
TU163261 lncRNA upstream 382343 24121610 ~ 24124569 (+) True G138239
TU163191 lncRNA upstream 516815 23989898 ~ 23990097 (+) True G138176
TU163176 lncRNA upstream 612196 23890430 ~ 23894716 (+) False praf2
TU163649 lncRNA downstream 87751 24646779 ~ 24647451 (+) True G138578
TU163669 lncRNA downstream 171959 24730987 ~ 24755138 (+) True LOC113533328
XR_004578576.1 lncRNA downstream 193012 24752040 ~ 24754872 (+) False LOC113533328
XR_004578578.1 lncRNA downstream 193513 24752541 ~ 24783425 (+) False LOC113533328
XR_004578577.1 lncRNA downstream 193641 24752669 ~ 24754872 (+) False LOC113533328
XM_026925025.2 mRNA upstream 8132 24495503 ~ 24498780 (+) True LOC113533128
XM_026925714.2 mRNA upstream 24344 24475586 ~ 24482568 (+) True LOC113533523
XM_026925320.2 mRNA upstream 41216 24434729 ~ 24465696 (+) True inpp5l
XM_026925010.2 mRNA upstream 76043 24408174 ~ 24430869 (+) True LOC113533124
XM_026925751.2 mRNA upstream 111068 24393579 ~ 24395844 (+) True foxb2
XM_034306727.1 mRNA downstream 2903 24561931 ~ 24624156 (+) True pdlim2
XM_034306723.1 mRNA downstream 3349 24562377 ~ 24624156 (+) False pdlim2
XM_034306725.1 mRNA downstream 9259 24568287 ~ 24624156 (+) False pdlim2
XM_034306724.1 mRNA downstream 9419 24568447 ~ 24624156 (+) False pdlim2
XM_026925600.2 mRNA downstream 73196 24632224 ~ 24691440 (+) True adgra2
TU163200 other upstream 493186 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 493186 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 749798 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 982936 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1247459 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 712581 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 1350547 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 1357062 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 1895444 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 1895594 26454622 ~ 26457276 (+) False car15

Expression Profile