RNA id: XM_026925056.2


Basic Information

Item Value
RNA id XM_026925056.2
length 2412
RNA type mRNA
GC content 0.48
exon number 2
gene id zbtb34
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19245748 ~ 19264636 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCATGCGCATTGCCAAGCGGGCCGGAGACGGAGATTGGGTAGtgacaacagcagcagcagcggcagcagcagctggtgaaggaggaggaggaggaggcggcTAGACTGGAGCTAAAGCGAGTCGCTCCGGGGGGAATGGACAGCATTTAAGCCGGAACGGCTTTCTGCAAACCAGGTGAGACATCAGTGAGTCATGGAGGACGAAGGCAGCTTCATAGAGTTTGATGTGCCAGAGTTCAGCAACACTGTTCTTAAGCAGCTCAATGAGCTGCGGCTCCAGGGTAAGCTCTGCGATATTATTGTGCACATCCAGGGCCGACCATTCCAGGCACACAAAGCTGTGCTGGCTGCCAGTTCACCATACTTCCGTGACCACTCGTCTCTAGGCACCATGAGTGGGCTCTCCATCTCGGTGATCAAGAACCCGGCAGTGTTTGAGCAGCTATTAACCTTTTGCTACACGGGACACATGGAGCTGCATCTGCGTGATGTTGTTAGCTTCCTTACTGCCGCCAGCTTCCTGCAAATGCAGGCTGTCATCGACAAGTGTACCCAGATCCTGGAGGGCCTCCATTCAAAGATCAGTTTGCCTGTGGTTTCTGGCCAAGCAGAATCTGAAGAAGACCTCGATTCTAGAGTGGGACACAATGGTGCAAAAGAGATGGGTATTTTTTTGAATCCTACCCAGATTTCCCCACCCTATTACCCTAGGAAAAGCCATCGAGTAGAAGCAAGTGGAGGTGGAAAAGGGCTTGTGCACTTAGCAGAGGAGGGGCAATCAGATCGAGGGAGCGATTGCGCTTCAGAGCAGGAGGCATCAATGGAAGTAGAGCCTGACCAAGTAGACTTGATTGAAAAGAACGGGCAAGTCGCTGATATACACATCAAGTTGGAAAAAACGGAGCGGCCCAGCTACTCAGACAGCTCTTCGGCGGGCGATGATAGCTTCCACACAGAACTGGTGGATGGTGAGCAAGTTTTAGCTGTGACTGTGGGACCTTATGGGCCAGTGCCACCCCCTGCTCAGTACACCTATTCAGCACTTCCTTCATCCTGCTTTGTCGGTATCAGTCCATCCAGTCCCTCTCAGTCAATTCTCAGTGGATTTCGAGGTGGCCGCACCAGACCTAGGCGGAATATGCCAGTCCCGGCTGATGTACTTTCTCAGCTTAAGCCAGGCGCAGAGGAAGGAGAGGGAATGGCATCAGGAGTTGTTTTTGAGAATGACGTGAGGGAACGAGGTCTCCGTGGCCATTGGTATCCTTTCAACGAGCGCCTTGTTTGTGTCTACTGTGGCAAGTCCTTCAACCAGAAAGGCAGCCTGGACCGCCACATGCGTTTGCACATGGGCATTACTCCATTCGTCTGCAAGTACTGTGGCAAGAAGTACACGCGCAAAGACCAACTAGAGTATCACATCCGTGGCCACACGGACAATAAACCCTTCCACTGCCAGATTTGCGGCAAGTGCTTCCCTTTTCAGGGCACCCTCAACCAGCACTTGCGCAAGAAGCACATGGGTTCCGGCGTCGAGGTGAACAACCACACAGGCCCACAGGGGGAAGCAGCAGATGGCCAGCGAGGGGCGCCAGTGGAGGTTTCGGAGATTGTGTACAACGATACCTATAATGATGATGGGTCTGCAAAAACGAGCGAGGAGAGTGTAAAAGGCAGTGCCGAAGAACCCCCTGGGCCCAGATGTGATTAAGATGTTGACCGTTTCTTGAGAAGTGGATGTTGAACCTGCCTTGCGCATTTTCTACTAGTACATTTTTGTGATCTGGTTTAAGAAGAGATAATGCATTCTTGATAAGCAAGTTTTTCAAAGGTGAGGGGAATTGTAGTCAGGGAGAAGGATTGAGTGAGACATCTCAATAATTAAGGccttcaaagttttttttttttttttatgttttttttatagataaataTTTCCATGTTTTTAAGCATAGAGTAATATAGGCATGTtgcaataatgaataatgtgaaaGCTCAGTTAAGATGCTTGTCATATCATGCTTTTACCTGACCTGTTTTTGCACATTTGGCCTCAAGTAGGCCAATAACTCACAAGGATTGGTTTTACCTACCAGTGCAAAAGCTCTGTGACACATCTGTTCAATACCTCATCATACAATGTAACATACTCACAATATGGCAGTATTGTCAAAGTTTATTCAGCTCCAACCGGGTTCTACCTCAGTCCAGAACCTGAAAGGAAGTGAACAAGCATCTTGTTTTAAAAGGTTTCATTTGCTTTACATAGCAATTTTGGCACAACACATTTTCACTACACAAAGCTTTGGTACTACATTGAACTGTTTGTTTGAGACTGTATGAAATCCAGACTGCTGTcattggatttttaaaaatgctatgtTTCTGAGAAAGGTGCTTTTTGGGTGGTTAGG

Function

GO: NA

KEGG:

id description
K10508 ZBTB34; zinc finger and BTB domain-containing protein 34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159609 lncRNA upstream 290547 18949227 ~ 18955201 (+) True G135101
TU159598 lncRNA upstream 361967 18883368 ~ 18883781 (+) True G135090
XR_003403429.2 lncRNA upstream 372127 18870421 ~ 18873621 (+) True LOC113533586
XR_003403430.2 lncRNA upstream 373843 18870417 ~ 18871905 (+) False LOC113533586
TU159590 lncRNA upstream 433038 18812490 ~ 18812710 (+) True G135085
TU159675 lncRNA downstream 4698 19269334 ~ 19269668 (+) True G135164
TU159680 lncRNA downstream 57326 19321962 ~ 19323271 (+) True G135169
TU159822 lncRNA downstream 143918 19408554 ~ 19484934 (+) True G135292
TU159824 lncRNA downstream 167996 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA downstream 221262 19485898 ~ 19486457 (+) True G135309
XM_026925119.2 mRNA upstream 45643 19146445 ~ 19200105 (+) True lmx1bb
XM_034306329.1 mRNA upstream 46925 19143547 ~ 19198823 (+) False lmx1bb
XM_026925120.2 mRNA upstream 46925 19143547 ~ 19198823 (+) False lmx1bb
XM_026925122.2 mRNA upstream 46925 19146445 ~ 19198823 (+) False lmx1bb
XM_034306330.1 mRNA upstream 46925 19146446 ~ 19198823 (+) False lmx1bb
XM_026925137.2 mRNA downstream 5990 19270626 ~ 19389662 (+) True ralgps1
XM_026925139.2 mRNA downstream 5990 19270626 ~ 19389662 (+) False ralgps1
XM_026925138.2 mRNA downstream 5990 19270626 ~ 19389662 (+) False ralgps1
XM_034306323.1 mRNA downstream 134102 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA downstream 134102 19398738 ~ 19403017 (+) False LOC113533125
TU159255 other upstream 783814 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1196859 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 1948865 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2510413 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2645163 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 222851 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 957779 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 957779 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 957779 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 957779 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile