RNA id: XM_034306308.1


Basic Information

Item Value
RNA id XM_034306308.1
length 1687
RNA type mRNA
GC content 0.50
exon number 13
gene id eif2d
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23534596 ~ 23546658 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTGCAGCCACGCGCTTATGCTTGCAGTGGTTGGCTAATGAAATGTAGCATGTTTGATACAAGATGTCACAAGTGTAATTCAGGCATTAGGTGGTTGTATTTCTTTAACTagttattacaaataaaatacacaacagGATGTTTGCAAAAGCGTTTCGTGTGAAGTCCAATACCGTTATCAAAGGATCCGACAGGAGGAAGCTGAGAGCGGACGTCTCCGCTGCCTTTCCGTCCCTGTCTGCTGATGACCTCAACGAGCTCGTACCGAACAAAGAAGAGCTGAACGTCGTAAAAATCTACGCACACAAAGGAGATGCTGTCACTCTGTATGTGCTCCACAGGAACCCAGTGTTCTTCCAGCTGGAGAAACAGCTGTACCCTACAGTGTACACACTTTGGCAGTATCCTGATCTGTTACCTGCCTTCACAACATGGCCTCCAGTGGTACAGAAATTAACTGGCGGGGCAGATCTGATGCTGCCAGGAGTAGTGGTGTCCTCTACAGGGCTACCAGACGTAAATCAGGGGGACAGCTGTGCTGTTAATGTCGTGTCCAACAGAGCTCCAGTTGCTGTGGGTACAGCGGCCGTGTCGAGCAGAGAGATGAGGACCAGTGGGATGAAGGGAAAAGGAGTAAATGTGTTACACACGTACATGGACCAGCTGTGGGCTTTTGGGGAGAAGACCACACCTCCTGTCATCCCAGTCACTGATCCTTCAGTCCAGGCAGAGGCAGACATGGACGGAGAGGAAAGTGGCGAAGAGGGAATGGAAGATTTGGCTCAGGAGAGCGCAGTACAGAAAGACTCTGGCACGGCTGCAGTGGAATCGTCTTGTCAGAACCTGCAGGATCTCAGTCtcggagagggagagaaagaggaggagacgGAGGAGGTGCAGGGAGAACAGGAGGATTCGAGATCTCCACAAGAGCAGATGGATTCTctgttgtttcagtgtttcctcCATGCCCTGAAGAGTAAAGTGAAGAAGTCGGAGCTCCCCCTGCTGACCGGCACCTTCCTGCGCAAGCACATGGGCTCATGCTGTCCTAAAGGAAAAAATCTTGACATCAAAAAATCCAGCTATAAAAAGCTCTCGAAGTTCCTGCAATCTATGCAGAAGGAGCACAATCTGGTTCGTGTAAAGGAGCTGAGTAAAGGAGTGGACAGCATTGTAGAGGTCGACTGGAAGAACGCTGAGTTGTGTTCTTTCTGCGTGCCGGAAGACTGGGAGCCTCCAGAGGAGTGTGTTGAGGATAGAGAGAGCTGTGCGGAGGTCTATAAGCCCCCTGAAATCACCCCACTTTACGGGGTCACCACACGCCTAGAGCCACTATTCCTGGATGCGcagaaaaaAAAGGGTGCAGTGCTACAGGCTGGTGAAGTGAGGAGCATCATCACCGATTATGTGAAAAGAAACGAGCTTGTTCATGAAACCAACAAAAGTTATGTGAACATCAACCCTGTGCTGTGTGACTGTTTACTGGAAAAATCTGAATATCAGGAGGTCGAGACGTTAAAATGGGACGATCTCTTCAGCCGAACACACTTGGCTGTGATTGCAGGACTCTGAGCAGGATGCAGTCGTGCCATCAGCTGCAGTTTCCAGGCCAGGCTCCTGTGGTCCGGAAAGGGCAGGTGGAGCCCATCGATATCACTGTAGCCTCCAGAGGCTCTAACAAG

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162558 lncRNA upstream 272605 23257671 ~ 23261991 (+) False tprg1l
TU162557 lncRNA upstream 273899 23248389 ~ 23260697 (+) False tprg1l
TU162556 lncRNA upstream 277198 23248597 ~ 23257398 (+) False tprg1l
TU162543 lncRNA upstream 375089 23095798 ~ 23159507 (+) True G137650
TU163000 lncRNA downstream 201737 23747463 ~ 23750368 (+) True G138014
TU163176 lncRNA downstream 344704 23890430 ~ 23894716 (+) False praf2
TU163191 lncRNA downstream 444172 23989898 ~ 23990097 (+) True G138176
TU163261 lncRNA downstream 575884 24121610 ~ 24124569 (+) True G138239
TU163307 lncRNA downstream 817223 24362949 ~ 24363761 (+) True G138280
XM_026925106.2 mRNA upstream 9891 23514586 ~ 23524705 (+) True pabpc1l
XM_026925107.2 mRNA upstream 9891 23514586 ~ 23524705 (+) False pabpc1l
XM_026925108.2 mRNA upstream 9891 23514586 ~ 23524705 (+) False pabpc1l
XM_026925111.2 mRNA upstream 9891 23514586 ~ 23524705 (+) False pabpc1l
XM_034306466.1 mRNA upstream 21037 23510195 ~ 23513559 (+) True LOC113533564
XM_034306881.1 mRNA downstream 27596 23573322 ~ 23640225 (+) False slc12a5b
XM_026925612.2 mRNA downstream 27596 23573322 ~ 23631438 (+) True slc12a5b
XM_034306691.1 mRNA downstream 97115 23642841 ~ 23651142 (+) True rbm39b
XM_026925342.2 mRNA downstream 97115 23642841 ~ 23651142 (+) False rbm39b
XM_026925424.2 mRNA downstream 136531 23682257 ~ 23703120 (+) True zgc:162200
XR_004578528.1 other upstream 10620 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 275143 23248348 ~ 23259453 (+) False tprg1l
trnaa-ugc_5 other upstream 1844104 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 1844500 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 1844858 21689667 ~ 21689738 (+) True trnat-cgu_3
TU162995 other downstream 204691 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 465891 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 465891 24011617 ~ 24013726 (+) False fkbp1aa
trnae-cuc_21 other downstream 1725883 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 2363849 25909575 ~ 25916798 (+) True LOC117597866

Expression Profile