Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026925124.2 |
| length | 1239 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 7 |
| gene id | LOC113533186 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 23505084 ~ 23509854 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005506 | iron ion binding | molecular_function |
| GO:0009055 | electron transfer activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| K00413 | CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU162558 | lncRNA | upstream | 243093 | 23257671 ~ 23261991 (+) | False | tprg1l |
| TU162557 | lncRNA | upstream | 244387 | 23248389 ~ 23260697 (+) | False | tprg1l |
| TU162556 | lncRNA | upstream | 247686 | 23248597 ~ 23257398 (+) | False | tprg1l |
| TU162543 | lncRNA | upstream | 345577 | 23095798 ~ 23159507 (+) | True | G137650 |
| TU163000 | lncRNA | downstream | 237609 | 23747463 ~ 23750368 (+) | True | G138014 |
| TU163176 | lncRNA | downstream | 380576 | 23890430 ~ 23894716 (+) | False | praf2 |
| TU163191 | lncRNA | downstream | 480044 | 23989898 ~ 23990097 (+) | True | G138176 |
| TU163261 | lncRNA | downstream | 611756 | 24121610 ~ 24124569 (+) | True | G138239 |
| TU163307 | lncRNA | downstream | 853095 | 24362949 ~ 24363761 (+) | True | G138280 |
| XM_026925266.2 | mRNA | upstream | 1574 | 23496631 ~ 23503510 (+) | True | eif2s2 |
| XM_026925267.2 | mRNA | upstream | 9207 | 23490838 ~ 23495877 (+) | True | LOC113533263 |
| XM_026925371.2 | mRNA | upstream | 20218 | 23478294 ~ 23484866 (+) | True | LOC113533314 |
| XM_034306900.1 | mRNA | upstream | 43658 | 23437236 ~ 23461426 (+) | True | LOC113533316 |
| XM_034306591.1 | mRNA | upstream | 88721 | 23407805 ~ 23416363 (+) | False | LOC113533315 |
| XM_026925780.2 | mRNA | downstream | 336 | 23510190 ~ 23513559 (+) | False | LOC113533564 |
| XM_034306466.1 | mRNA | downstream | 341 | 23510195 ~ 23513559 (+) | True | LOC113533564 |
| XM_026925106.2 | mRNA | downstream | 4732 | 23514586 ~ 23524705 (+) | True | pabpc1l |
| XM_026925107.2 | mRNA | downstream | 4732 | 23514586 ~ 23524705 (+) | False | pabpc1l |
| XM_026925108.2 | mRNA | downstream | 4732 | 23514586 ~ 23524705 (+) | False | pabpc1l |
| XR_004578647.1 | other | upstream | 245631 | 23248348 ~ 23259453 (+) | False | tprg1l |
| trnaa-ugc_5 | other | upstream | 1814592 | 21690421 ~ 21690492 (+) | True | trnaa-ugc_5 |
| trnaa-ugc_4 | other | upstream | 1814988 | 21690025 ~ 21690096 (+) | True | trnaa-ugc_4 |
| trnat-cgu_3 | other | upstream | 1815346 | 21689667 ~ 21689738 (+) | True | trnat-cgu_3 |
| trnaa-ugc_3 | other | upstream | 1816493 | 21688520 ~ 21688591 (+) | True | trnaa-ugc_3 |
| XR_004578528.1 | other | downstream | 4732 | 23514586 ~ 23523976 (+) | False | pabpc1l |
| TU162995 | other | downstream | 240563 | 23750417 ~ 23757114 (+) | True | G138010 |
| TU163200 | other | downstream | 501763 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| TU163201 | other | downstream | 501763 | 24011617 ~ 24013726 (+) | False | fkbp1aa |
| trnae-cuc_21 | other | downstream | 1761755 | 25271609 ~ 25271680 (+) | True | trnae-cuc_21 |
